Input parameters:

  Query = AT5G25150.1 (Len=669)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G25150.1, Len=669):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDPEQINEFVVGYLKKKGFSSAAKDLESYHHQNNNGSSFTSVDYHNDPELTKLIRSFSQQEDDPTRYREGYSKLRSWAYN 80  
WD40-rpts                                                                                      

Query       81 SLDLYKHELLRVMYPVFIHCYMDLVGKGHTQEARAFFNSFRKDHEMVHLRDLQKLEGVLSPSHLEEMEFARSLRKSKVNI 160 
WD40-rpts                                                                                      

Query      161 KFCQYSYELLLQYLHSTVSTLMLGIINEHINFQVYSGQPTSSSDDIEAVTIVGSFQDTANHINQKEIQWGLLEDSLEDRL 240 
WD40-rpts                                                                                      

Query      241 EKTGGLLSDSEKGQGESKDGDADDSKKRSTEIGKQGSSLKKLKKDKAGNATAKVARLETITVSPAPRVKPELALPVMSTD 320 
WD40-rpts                                                            (___________________WD 1__

Query      321 VEQSILEDLRNRVQLSSVAMPSVSFYTFVNTHNGLNCSSISHDGSLVAGGFSDSSIKVWDMAKIGQAGSGALQAENDSSD 400 
WD40-rpts      ________________)    (_________________WD 2________________)                    

Query      401 QSIGPNGRRSYTLLLGHSGPVYSATFSPPGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDAQFSPFGHYFASCSH 480 
WD40-rpts             (_________________WD 3________________)   (_________________WD 4_________

Query      481 DRTARIWSMDRIQPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGECVRIFIGHRSMVLSLAMSPDGRYMA 560 
WD40-rpts      _______)   (_________________WD 5________________)   (_________________WD 6_____

Query      561 SGDEDGTIMMWDLSTARCITPLMGHNSCVWSLSYSGEGSLLASGSADCTVKLWDVTSSTKLTKAEEKNGNSNRLRSLRTF 640 
WD40-rpts      ___________)   (_________________WD 7________________)                          

Query      641 PTKSTPVHALRFSRRNLLFAAGAISKPAN 669 
WD40-rpts                                   

7 WD40-repeats found in QUERY=AT5G25150.1 (Len=669):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   295-337      3.39  254.74  0.02275        5.0%     16.02
  WD 2:  Seg  5   342-380      8.12  450.09  5.3e-05       32.5%     56.50
  WD 3:  Seg  9   408-446      8.09  448.65  5.6e-05       37.5%     49.74
  WD 4:  Seg 13   450-488      9.12  491.41  1.5e-05       32.5%     51.66
  WD 5:  Seg 17   492-530      9.70  515.14  7.1e-06       35.0%     48.18
  WD 6:  Seg 21   534-572     11.05  571.20  1.2e-06       55.0%     54.04
  WD 7:  Seg 25   576-614     10.62  553.34  2.2e-06       47.5%     53.57

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  295-337    ARLETITVSPAPRVKPELALPVMSTDVEQSILEDLRNRVQLSS
   WD 2  342-380    -S---VSFYTFVNTHNGLNCSSISHDGSLVAGGFSDSSIKVWD
   WD 3  408-446    -R---RSYTLLLGHSGPVYSATFSPPGDFVLSSSADTTIRLWS
   WD 4  450-488    -N---ANLVCYKGHNYPVWDAQFSPFGHYFASCSHDRTARIWS
   WD 5  492-530    -I---QPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWD
   WD 6  534-572    -G---ECVRIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWD
   WD 7  576-614    -A---RCITPLMGHNSCVWSLSYSGEGSLLASGSADCTVKLWD

   WD40 Template    TG---ECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD