Input parameters:

  Query = AT5G24710.1 (Len=1377)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G24710.1, Len=1377):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLRARAFRQTNGKIVKIQVHPTHPWLVTADDSDHVSVWNWEHRQVIYELKAGGVDERRLVGAKLEKLAEGESDYKAKPTE 80  
WD40-rpts      (_________________WD 1________________)                                         

Query       81 AIRGGSVKQVKFYDDDVRYWQLWRNRSAAAESPSAVNHLTSAFTSPAPSTKGRHFLVICCENKAIFLDLVTMRGRDVPKQ 160 
WD40-rpts                                                                                      

Query      161 ELDNKSLLCMEFLSRSSGGDGPLVAFGSTDGVIRVLSMITWKLARRYTGGHKGSIYCLMNFMASSGEALLVSGGSDGLLV 240 
WD40-rpts                                (__________________________WD 2_______________________

Query      241 LWSADHGADSRELVPKLSLKAHDGGVVAVELSRVSGSAPQLITIGADKTLAIWDTMTFKELRRIKPVPKLACHSVASWCH 320 
WD40-rpts      __)(_______________________WD 3______________________)                          

Query      321 PRAPNLDILTCVKDSHIWSIEHPTYSALTRPLCELSSLVPPQVLATHRKLRVYCMVAHPLQPHLVATGTNVGIIVSEFDP 400 
WD40-rpts                                                                                      

Query      401 RAIPSAAPLPALPGSRENSAIYILGRELKLLNFQLSNTANPSLGNNSALSESGLSKGDPGEQLTVKQTKKQIVAPVPHDS 480 
WD40-rpts                                                                                      

Query      481 YSVLSVSSSGKYVAVVWPDILYFSIYKVSDWSIVDSGSARLLAWDTCRDRFAILESVLPHRMPIIPKGGSSRKAKEAAAA 560 
WD40-rpts                                                                                      

Query      561 AAQAAAAASAASSASVQVRILLDDGTSNILMRSVGGRSEPVIGLHGGALLGIGYRTSRRISPVAATAISTIQSMPLSGFG 640 
WD40-rpts                                                                                      

Query      641 NSNVSSFSSYDDGFSSQKSAESAPLNYQLYSWENFEPVGGMLPQPEWTAWDQTVEYCAFAYQQYMVISSLRPQYRYLGDV 720 
WD40-rpts                                                                                      

Query      721 AIAHATGAVWHRRQLFVATPTTIECVFVDAGVSEIDIETRKMKEEMKLKEAQARAVAEHGELALITVEGSQAAKQERISL 800 
WD40-rpts                                                                                      

Query      801 RPPMLQVVRLASFQNAPSVPPFLSLPRQSRGDSDDIMDERRVNEVAVGGGGVSVAVTRFPVEQKRPVGPLVVAGVRDGVL 880 
WD40-rpts                                                     (____________________WD 4________

Query      881 WLIDRYMCAHAISLNHPGIRCRCLAAYGDAVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSN 960 
WD40-rpts      ___________)                                                                    

Query      961 DLKRALHCLLTMSNSKDIGQDGVGLDLSDILSLTATKKEDVVEAVEGIVKFAKEFLDLIDAADATGHADIAREALKRLAT 1040
WD40-rpts                                                                                      

Query     1041 AGSVKGALQGHELRGLSLRLANHGELTRLSGLVNNLISIGLGRESAFSAAVLGDNALMEKAWQDTGMLAEAVLHAHAHGR 1120
WD40-rpts                                                                                      

Query     1121 PTLKNLVQAWNKTLQKEVEKAPSSKTDAASAFLASLEDPKLTSLSDASRKPPIEILPPGMSSIFASITAPKKPLLTQKTA 1200
WD40-rpts                                                                                      

Query     1201 QPEVAKPLALEEPTKPLAIEAPPSSEAPQTESAPETAAAAESPAPETAAVAESPAPGTAAVAEAPASETAAAPVDGPVTE 1280
WD40-rpts                                                                                      

Query     1281 TVSEPPPVEKEETSLEEKSDPSSTPNTETATSTENTSQTTTTPESVTTAPPEPITTAPPETVTTTAVKPTENAATERRVT 1360
WD40-rpts                                                                                      

Query     1361 NYPPIRSQPIDFDFLNG 1377
WD40-rpts                       

4 WD40-repeats found in QUERY=AT5G24710.1 (Len=1377):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39       3.34  252.62  0.02427       15.0%     43.01
  WD 2:  Seg 10   187-243      5.43  339.08  0.00168       30.0%     40.41
  WD 3:  Seg 14   244-294      4.29  292.00  0.00721       27.5%     46.19
  WD 4:  Seg 39   848-892      2.92  235.08  0.04147       22.5%     13.13

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-39     MLR---------ARAFRQ------------TNGKIVKI----QVH---PTHPWLVTADDSDHVSVWN--------
   WD 2  187-243    GST------DGVIRVLSMITWKLARRYTGGHKGSIYCLMNFMA-S---SGEALLVSGGSDGLLVLWS--------
   WD 3  244-294    ADHGADSRELVPKLSLKA------------HDGGVVAV----ELSRVSGSAPQLITIGADKTLAIWD--------
   WD 4  848-892    GGG--------GV---SV------------AVTRFPVE----QKR---PVGPLVVAGVRDGVLWLIDRYMCAHAI

   WD40 Template    TGE--------CLRTLSG------------HTSGVTSV----SFS---PDGKRLVSGSEDGTIKVWD--------