Input parameters:

  Query = AT5G24280.1 (Len=1598)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G24280.1, Len=1598):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSRRSVKRSLVLDDDDDEDIFYNFKVLLPNGTSVKLTLKNPEPEISMQSFVNLVKKEYDNARKDCLLMSKRMKVDWNSG 80  
WD40-rpts                                                                                      

Query       81 GKFHLESNGGKMKGIVRFAAFKPDLCHIIRLDDGSGIASTMYENLWDLTPDTDLLKELPENYSFETALADLIDNSLQAVW 160 
WD40-rpts                                                                                      

Query      161 PYREGARKLISVDISGDHITVFDTGRGMDSSEGNSIDKWGKIGASLHRSQKTGAIGGNPPYLKPYFGMFGYGGPYASMFL 240 
WD40-rpts                                                                                      

Query      241 GRCDFSFCLPILICIVLLRLTLFSVRRTLVSSKTKESKKVFTLQFKKEALIDNRSIVGKNWKTDGGMRDPSEEEMKLSPH 320 
WD40-rpts                                                                                      

Query      321 GSFTKVEIFESEFDISKIYQLQCRLKDIYFPYIQFCLATIFLCDELSKTGRTERPVAFQVNGEDLAEIAGGEVAITNLHS 400 
WD40-rpts                                                                                      

Query      401 KGQFFSFQIRFTLFGGKRKGTAQEANARLKFVYFPIVQGKESIEKILQSLEEEGCKVSESFQTFGRVSLRRLGRLLPEVR 480 
WD40-rpts                                                                                      

Query      481 WDSIPFMQRGNRASTLQKSCRRVKCFVDLDAGFSPTPSKTDLASQNPFSVALRNFGSKSTEKEKDDDVNIVIHREGKSVS 560 
WD40-rpts                                                                                      

Query      561 YAHLEEKYQEWVLEMHNTHDEEAASGLDEAVLIVGSLDKKALGILRDAVRVHKEVRRKEKTWKRGQNIKILRGAYAGIHN 640 
WD40-rpts                                                                                      

Query      641 NNVYATIDYFLIEGFEDEAGGDTRILCRPIDRPENEGCKLSIIDGISKLEVQSSLSLPITIIDSGKCLPVDANEWNRKLD 720 
WD40-rpts                                                 (_______________________WD 1_________

Query      721 KQQEKAPSKIDLLDERDCRELKIDGELPIGNSVRAGKAPPKQIVAVVRPACFTSLTPSKKLDQKNIVKMDGEEMVMVVKL 800 
WD40-rpts      _____________)                                                                  

Query      801 KSSDKNISSQRLFPTSRKGISGLYIFSLGSKFPNLFKKAGTYNFSFSIGNSIKCNKTVVVRPSSKAARWELDDNLESLPC 880 
WD40-rpts                                                                                      

Query      881 NVRVGSSLPPFRIACFDKYKNKIPFTSVPSLEVELEASPGFLIKIDKLETNLINDGLILKIENMLVETDELDQIRPNYEA 960 
WD40-rpts                                                                                      

Query      961 TLEIRAMDNPFSVSVPCKVNPGPLKRVAVNNPKALENLLPDSTVEDFILELFDGYNNHVAEGTDVLIHIDGYRIEDWMGI 1040
WD40-rpts                                                                                      

Query     1041 NRKVDSRGCINLSGILKVTEGYGKSVSLSVMSGNEVIFCKESQIDERQLRLVTELPDCCTAGTNLMNLIFQVTELDGSLD 1120
WD40-rpts                                                                                      

Query     1121 TSIHHDEKSGCFHTMSIESDSSSVESAIRYAFVHGSCKVSSLSLPENEGVFSCRVFHSRYPELQMSIKIQVTSAPTSERE 1200
WD40-rpts                                                                                      

Query     1201 ESGYSTPHSKTTPPPESGIPSITNPWPTPCSQFGVLAIRSSSLALSSETSLMDMAQYTEDLKEKINIDEERRVELEERLK 1280
WD40-rpts                                                                                      

Query     1281 CLQAQREHAEQECSRLQASLEPLGAPFPECLSTKESMMKQIEEKHHDTAASVFCCLYRKAPPPRSLFLSQKGMFGVVALL 1360
WD40-rpts                                                                                      

Query     1361 GSVASTSLSRVLSEYLGKDTMLSLVCKSSQFGPKSDEYRKFQSEAASLGRSITNRFLVICLDATRPWRNGLVRNDPQKRL 1440
WD40-rpts                                                                                      

Query     1441 AMDNPYLPNGDPIPGFKGYAVNMIDLASEELDIQSSSGYGLRETLFYGVFRELQVYETAEHLEAALPHINGGDAVSLDGV 1520
WD40-rpts                                                                                      

Query     1521 IARENGFIYSGCCTPEVHFPITVTERQEKALVQLEITRDKKRKTEEMMTEENRSLRRLVKKLKKANEKYQNFTAMADS 1598
WD40-rpts                                                                                    

1 WD40-repeats found in QUERY=AT5G24280.1 (Len=1598):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 25   684-734      3.29  250.43  0.02596       20.0%     29.57

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  684-734    DGISKLEVQSSLSLPITIIDS--GKCLPVDANEWNRKLDKQQEKAPSKIDLLD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGS-------------EDGTIKVWD