Input parameters:

  Query = AT5G24220.1 (Len=376)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G24220.1, Len=376):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGRGSLRKLIGGGGEMASDSDRDVFSIFGPFHLTSIDWTNSYHRTSVASSLVNGVYTMERDKQEKRVGSESRAMPWWDFF 80  
WD40-rpts                                                                                      

Query       81 NFSLVETLIDDYDSSIYGAVFEYKLSNLCQNTSHAKAPPRYVIAFRGTILESDTWMTDVKHNLKFSFNTLHEGGRSLQAI 160 
WD40-rpts                                                                                      

Query      161 RAIRSMVDKHSEAAIWLAGHSLGAALVLLAGKTMTSFGFLLESYIFNPPISCIPLEQLPGGKKIKGVFQFTKTVVKATVA 240 
WD40-rpts               (__________________________________________WD 1________________________

Query      241 MVLTDLQVQEDDPKTASWIPYLYVNPADPICAGYIDYFRHKTFMSEIGASHIERIGAGKSVRSLLMGKSSSSDLSTEPLH 320 
WD40-rpts      __________________)                                                             

Query      321 LLPSADMIVNKNKPTKVMTAHGLHQWWERDSAMRENWESCCIRPYPDGKLEQLTIQ 376 
WD40-rpts                                                              

1 WD40-repeats found in QUERY=AT5G24220.1 (Len=376):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   170-259      2.87  233.25  0.04384       25.0%     20.09

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  170-259    HSEAAIWLAGHSLGAALVLLAGKTMTSFGFLLESYIFNPPISCIPLEQLPGGKKIKGVFQFTKTVVKATVAMVLTDLQVQEDDPKTASWI

   WD40 Template    TGECLRTLSGHT-----------------SGVTSVSFSPDGKRLVSGSEDGTIKV---------------------------------WD