Input parameters:

  Query = AT5G23730.1 (Len=368)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G23730.1, Len=368):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNTLHPHKQQQEQAQQQEEARYEWDLSLSTVVSSSSSSASDVIGAIEFDPTDNIVATAGISRKIRFYGLPSLLRNNAVSG 80  
WD40-rpts        (_________WD 1________)(___________________WD 2__________________)          (_

Query       81 TGVSFVDQATACEYYICTPAKLSSLRWRPGSGGRVIGSGDYDGVVMEYDLEKRTPVFERDEHGGRRVWSVDYTRHGGAST 160 
WD40-rpts      ______________________WD 3______________________)   (___________________WD 4____

Query      161 VGASGSDDGTMQVWDPRCPPEESVGVVRPAGICRSAVCCVEFDPSGGPAVAVGCADRKGYVYDIRKLVDPALTLQGHTKT 240 
WD40-rpts      ______________)        (_________________WD 5_________________)    (____________

Query      241 VSYVRFLDGGTVVTAGTDGCLKLWSVEDGRVIRTYEGHVNNRNFVGLSVWRNGALFGCGSENNRVFVYDRRWGKPVWVDG 320 
WD40-rpts      ____WD 6________________)   (__________________WD 7_________________)           

Query      321 FEPVGMNSGSDKRFVSSVCWRQSGVDQCTLVAGGSDGVLQVYVGKRKP 368 
WD40-rpts       (__________________WD 8__________________)     

8 WD40-repeats found in QUERY=AT5G23730.1 (Len=368):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-25       2.83  231.73  0.04592        5.0%     29.15
  WD 2:  Seg  3    26-68       7.34  417.93  0.00014       10.0%     53.37
  WD 3:  Seg  8    79-129      6.93  401.01  0.00025       22.5%     51.26
  WD 4:  Seg 12   133-175      7.05  405.83  0.00021       35.0%     47.25
  WD 5:  Seg 16   184-223      7.14  409.50  0.00019       27.5%     52.37
  WD 6:  Seg 20   228-265      7.95  443.12  6.6e-05       35.0%     50.04
  WD 7:  Seg 24   269-309      8.49  465.52  3.3e-05       32.5%     55.67
  WD 8:  Seg 28   322-363      6.62  388.29  0.00036       25.0%     43.61

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-25     ---------------------------TLHP--HK--Q---QQ---EQAQQQEEARYEWD
   WD 2   26-68     LS------LSTVVSSSSSSASD-VIGAIEFD--PT--D---NI---VATAGISRKIRFYG
   WD 3   79-129    SGTGVSFVDQATACEYYICTPA-KLSSLRWR--PGSGG---RV---IGSGDYDGVVMEYD
   WD 4  133-175    -R---------TPVFERDEHGGRRVWSVDYT--RH--G---GASTVGASGSDDGTMQVWD
   WD 5  184-223    -V---------GVVRPAGICRS-AVCCVEFD--PS--G--GPA---VAVGCADRKGYVYD
   WD 6  228-265    -V---------DPALTLQGHTK-TVSYVRFL--DG--G----T---VVTAGTDGCLKLWS
   WD 7  269-309    -G---------RVIRTYEGHVN-NRNFVGLSVWRN--G---AL---FGCGSENNRVFVYD
   WD 8  322-363    -E---------PVGMNSGSDKR-FVSSVCWR--QS--GVDQCT---LVAGGSDGVLQVYV

   WD40 Template    TG---------ECLRTLSGHTS-GVTSVSFS--PD--G---KR---LVSGSEDGTIKVWD