WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: AT5G23430.2 [Arabidopsis thaliana] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = AT5G23430.2 (Len=836) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (AT5G23430.2, Len=836): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MTTKRAYKLQEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAGAAS 80
WD40-rpts (__________________WD 1_________________) (_________________WD 2__________
Query 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVS 160
WD40-rpts ______) (_________________WD 3________________) (_________________WD 4______
Query 161 GGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDGK 240
WD40-rpts __________) (_________________WD 5________________) (________________WD 6___
Query 241 TVLCGLQESLKIFSWEPIRCHDGVDVGWSRLSDMNVHEGKLLGCSYNQSCVGVWVVDLSRTEPCMAGDTAQSNGHPEKRS 320
WD40-rpts _____________) (________________WD 7________________) (___________________WD
Query 321 CSGRDPVVLNDNNSKTVLGKLSVSQNVDPLLKETKSLGRLSVSQNSDPSTKETKSIGRSSTSQNSESSMKESKPLGRLSV 400
WD40-rpts 8__________________) (_________________WD 9_____
Query 401 SQNSDVSKESRTFSSTGSLPGTPHRVSSTNVSKATSGVSTAVSNAATSRRNFTKANPKANPVNKAADFAPVIVPRADPRI 480
WD40-rpts ___________)(_________________WD10________________) (_________________WD11____
Query 481 EQATESRAELDIIARTMPYSLQAADSRRSPSSRNNPDLPDASVLEMSESQPVEPNNIPDGGTLPGGKVGMRGATERSIND 560
WD40-rpts ____________)
Query 561 FRYKRYGRSNSRSRMGSPPRNHDENYDLVSHRSNRDPSPTESQKGGRFQSLVINRERRGRFSNFEGPVSNFSSGNMPAPN 640
WD40-rpts
Query 641 IRPSNMFKQRGNHMPVEQGIDSPSEENIVEDIMGKHNQFVSSMQSRLAKLQVVRRYWERNDVKNSIGSIEKMADNAVTAD 720
WD40-rpts
Query 721 VLGIITERNEILTLDNCTSLLPLLTALLGSGMDQHLSVSLDLLLKLVRLYGSPIYSSLSAPASVGVDIEAEQRIERYSRC 800
WD40-rpts
Query 801 FVELEKVKACLPSLARGGLVAKSVLELNLAFQEVSS 836
WD40-rpts
 11 WD40-repeats found in QUERY=AT5G23430.2 (Len=836): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 5-45 7.42 421.12 0.00013 22.5% 55.69 WD 2: Seg 5 49-87 9.73 516.55 6.8e-06 37.5% 55.31 WD 3: Seg 9 91-129 10.26 538.55 3.4e-06 45.0% 57.13 WD 4: Seg 13 133-171 10.83 562.01 1.7e-06 50.0% 55.40 WD 5: Seg 17 175-213 9.69 515.04 7.1e-06 35.0% 57.01 WD 6: Seg 21 217-254 7.20 411.90 0.00017 30.0% 55.87 WD 7: Seg 25 258-295 5.48 341.18 0.00157 17.5% 54.68 WD 8: Seg 29 299-341 3.67 266.38 0.01590 12.5% 33.81 WD 9: Seg 33 374-412 6.59 386.82 0.00038 17.5% 41.09 WD10: Seg 36 413-451 6.36 377.18 0.00051 12.5% 42.32 WD11: Seg 39 455-493 4.20 288.07 0.00814 7.5% 18.08Multiple sequence alignment of 11 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 5-45 RAYKLQEFVAHSAAVNC----LKIGRKSSRVLVTGGEDHKVNLWA WD 2 49-87 -PNAILSLYGHSSGIDS----VTFD-ASEVLVAAGAASGTIKLWD WD 3 91-129 -AKIVRTLTGHRSNCIS----VDFH-PFGEFFASGSLDTNLKIWD WD 4 133-171 -KGCIHTYKGHTRGVNV----LRFT-PDGRWVVSGGEDNIVKVWD WD 5 175-213 -GKLLTEFKSHEGQIQS----LDFH-PHEFLLATGSADRTVKFWD WD 6 217-254 -FELIGSGGPETAGVRC----LSFN-PDGKTVLCGL-QESLKIFS WD 7 258-295 -IRCHDGVDVGWSRLSD----MNVH--EGKLLGCSYNQSCVGVWV WD 8 299-341 -SRTEPCMAGDTAQSNGHPEKRSCS-GRDPVVLNDNNSKTVLGKL WD 9 374-412 -KSIGRSSTSQNSESSM----KESK-PLGRLSVSQNSDVSKESRT WD10 413-451 -FSSTGSLPGTPHRVSS----TNVS-KATSGVSTAVSNAATSRRN WD11 455-493 -ANPKANPVNKAADFAP----VIVP-RADPRIEQATESRAELDII WD40 Template TGECLRTLSGHTSGVTS----VSFS-PDGKRLVSGSEDGTIKVWD |
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