Input parameters:

  Query = AT5G21040.2 (Len=539)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G21040.2, Len=539):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEFECQERLEAANDQRSESGLLNTDLRIGNDGSVEIPNVKLCCQKKKGTLVPSGSKQLLSDKDLSTTIIDLPQALISEIL 80  
WD40-rpts                                                                                      

Query       81 NCLDPKELGLVSCVSTYLHRLASEHHAWKEFYRERWGLPVVFGAASSGLSDERSWKDLFVEREFRSRTFLGRYSIDTLYG 160 
WD40-rpts                            (____________________WD 1____________________)   (________

Query      161 HTEAVRTVFLLASAKLVFTSGYDSIVRMWDMEEGLSIAASKPLGCTIRALAADTKLLVAGGTDGFIHCWKSLDGLRNLFD 240 
WD40-rpts      _________WD 2________________)(_________________WD 3_________________)          

Query      241 LTGFQKEKTEFRLWGHEGPITSLALDMTSIFSGSWDMSVRIWDRSSMKCVKTLRHSDWVWGLAPHETTLASTSGSDVYIW 320 
WD40-rpts            (________________WD 4_______________)   (_______________WD 5______________

Query      321 DVSSETPLAIIPDAHEGTTYSLARSHTGDFLFTGGEDGGIKMFEIRRYGSETSVVLISQWMPHTSPVYSLSFEFPWLVSA 400 
WD40-rpts      )(___________________WD 6__________________)         (________________WD 7______

Query      401 SGDGKLALIDVRKLLKTNRCAYSKRISSSTVEPPQRMLHGFGSNLFSVDVGYDRIVCGGEEGTVRIWNFTQALEIERRTR 480 
WD40-rpts      _________)                          (_____________WD 8_____________)           (

Query      481 ALKGMRHENRMRRRRMQMEMNAKNGRPDQCSIAAHKNPINGERNRAWHSKRRASGKAKA 539 
WD40-rpts      _______________WD 9_______________)                        

9 WD40-repeats found in QUERY=AT5G21040.2 (Len=539):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   103-148      4.14  285.70  0.00876        7.5%     24.15
  WD 2:  Seg  5   152-190      9.39  502.40  1.1e-05       27.5%     56.81
  WD 3:  Seg  9   191-230      7.52  425.38  0.00012       32.5%     48.49
  WD 4:  Seg 13   247-283      6.54  384.91  0.00040       30.0%     52.86
  WD 5:  Seg 17   287-321      4.70  308.95  0.00426       27.5%     47.38
  WD 6:  Seg 21   322-364      8.13  450.65  5.2e-05       27.5%     50.64
  WD 7:  Seg 25   374-410      6.70  391.59  0.00033       35.0%     53.69
  WD 8:  Seg 29   437-468      6.83  396.60  0.00028       32.5%     47.66
  WD 9:  Seg 32   480-515      3.27  249.57  0.02665        7.5%     37.78

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  103-148    SEH---HAWKEFYRERWGLPVVFGAASSGLSDERSWKDLFVEREFRSRT
   WD 2  152-190    -RY---SIDTLYGHTEAVRTVFLL------ASAKLVFTSGYDSIVRMWD
   WD 3  191-230    MEE---GLSIAASKPLGCTIRALA------ADTKLLVAGGTDGFIHCWK
   WD 4  247-283    -EK---TEFRLWGHEGPITSLAL--------DMTSIFSGSWDMSVRIWD
   WD 5  287-321    -MK---CVKTL-RHSDWVWGL--A------PHETTLASTS-GSDVYIWD
   WD 6  322-364    VSSETPLAIIPDAHEGTTYSLARS------HTGDFLFTGGEDGGIKMFE
   WD 7  374-410    -VV---LISQWMPHTSPVYSLSF--------EFPWLVSASGDGKLALID
   WD 8  437-468    ---------MLHGFGSNLFSVDVG------YD--RIVCGGEEGTVRIWN
   WD 9  480-515    R------ALKGMRHENRMRRRRMQ------MEM-NAKNGRPDQCSIAAH

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFS------PDGKRLVSGSEDGTIKVWD