Input parameters:

  Query = AT5G21040.1 (Len=539)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G21040.1, Len=539):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEFECQERLEAANDQRSESGLLNTDLRIGNDGSVEIPNVKLCCQKKKGTLVPSGSKQLLSDKDLSTTIIDLPQALISEIL 80  
WD40-rpts                                                                                      

Query       81 NCLDPKELGLVSCVSTYLHRLASEHHAWKEFYRERWGLPVVFGAASSGLSDERSWKDLFVEREFRSRTFLGRYSIDTLYG 160 
WD40-rpts      (_______________________________WD 1_______________________________)   (________

Query      161 HTEAVRTVFLLASAKLVFTSGYDSIVRMWDMEEGLSIAASKPLGCTIRALAADTKLLVAGGTDGFIHCWKSLDGLRNLFD 240 
WD40-rpts      _________WD 2________________)(_________________WD 3_________________)          

Query      241 LTGFQKEKTEFRLWGHEGPITSLALDMTSIFSGSWDMSVRIWDRSSMKCVKTLRHSDWVWGLAPHETTLASTSGSDVYIW 320 
WD40-rpts            (________________WD 4_______________)   (_______________WD 5______________

Query      321 DVSSETPLAIIPDAHEGTTYSLARSHTGDFLFTGGEDGGIKMFEIRRYGSETSVVLISQWMPHTSPVYSLSFEFPWLVSA 400 
WD40-rpts      )(___________________WD 6__________________)         (________________WD 7______

Query      401 SGDGKLALIDVRKLLKTNRCAYSKRISSSTVEPPQRMLHGFGSNLFSVDVGYDRIVCGGEEGTVRIWNFTQALEIERRTR 480 
WD40-rpts      _________)                          (_____________WD 8_____________)          (_

Query      481 ALKGMRHENRMRRRRMQMEMNAKNGRPDQCSIAAHKNPINGERNRAWHSKRRASGKAKA 539 
WD40-rpts      _______________WD 9_______________)                        

9 WD40-repeats found in QUERY=AT5G21040.1 (Len=539):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    81-148      3.71  267.98  0.01514       10.0%     18.26
  WD 2:  Seg  7   152-190      9.55  509.28  8.5e-06       27.5%     54.89
  WD 3:  Seg 11   191-230      7.57  427.37  0.00011       32.5%     47.72
  WD 4:  Seg 15   247-283      6.56  385.61  0.00040       30.0%     49.26
  WD 5:  Seg 19   287-321      4.73  310.06  0.00412       27.5%     46.44
  WD 6:  Seg 23   322-364      8.17  452.30  5.0e-05       27.5%     45.41
  WD 7:  Seg 26   374-410      6.73  392.51  0.00032       35.0%     53.37
  WD 8:  Seg 30   437-468      6.92  400.59  0.00025       32.5%     46.02
  WD 9:  Seg 33   479-515      4.26  290.43  0.00757       10.0%     40.92

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   81-148    NCL---DPKELGLVSCVSTYLHRLASEHHAWKEFYRERWGLPVVFGAASSGLSDERSWKDLFVEREFRSRT
   WD 2  152-190    -RY---SIDTLYGHTEA----------------------VRTVFLLA------SAKLVFTSGYDSIVRMWD
   WD 3  191-230    MEE---GLSIAASKPLG----------------------CTIRALAA------DTKLLVAGGTDGFIHCWK
   WD 4  247-283    -EK---TEFRLWGHEGP----------------------ITSLAL--------DMTSIFSGSWDMSVRIWD
   WD 5  287-321    -MK---CVKTL-RHSDW----------------------VWGL--AP------HETTLASTS-GSDVYIWD
   WD 6  322-364    VSSETPLAIIPDAHEGT----------------------TYSLARSH------TGDFLFTGGEDGGIKMFE
   WD 7  374-410    -VV---LISQWMPHTSP----------------------VYSLSF--------EFPWLVSASGDGKLALID
   WD 8  437-468    ---------MLHGFGSN----------------------LFSVDVGY------D--RIVCGGEEGTVRIWN
   WD 9  479-515    TRA---LKG--MRHENR----------------------MRRRRMQM------EMN-AKNGRPDQCSIAAH

   WD40 Template    TGE---CLRTLSGHTSG----------------------VTSVSFSP------DGKRLVSGSEDGTIKVWD