Input parameters:

  Query = AT5G19970.1 (Len=363)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G19970.1, Len=363):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLLNKYVLTTISDRSFIRQLNDGSQRDTWIFVYTRRWRRDNGVLHGFSDRSVRWFKIPVAEILAGEIRPGEDLYLLTAS 80  
WD40-rpts                                                                                     (

Query       81 GNFLLFASNTHSGIIAVDLVGKIVTRISSCPLGPRGTSSWRRSGMKLVPDPSNPSHFRFMFAEMVNNRPVLFTYYSNTAT 160 
WD40-rpts      __________________________________WD 1__________________________________)       

Query      161 WHTKETEDTTNWEVKKNSNVLFLSLSNRPHESTVMSVDDGSIINRFPRILRPRINQDAIRQCPSSVGFSRNDLESQLLHI 240 
WD40-rpts                                                                                      

Query      241 HGDEYKVVIRLDRIDNSKMNKVMKSLEVWEISSNGEKWELVSRAPSEVISKKPCGVMMGCLERRLGVIRVALMTNHEGLW 320 
WD40-rpts                                                                                      

Query      321 NIIWLDYDKHKDKWEWVPLPDCRFLQGSNMAGISFSSGLTFSL 363 
WD40-rpts                                                 

1 WD40-repeats found in QUERY=AT5G19970.1 (Len=363):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    80-153      2.91  234.98  0.04159       25.0%     31.30

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   80-153    SGNFLLFASNTHSGIIAVDLVGKIVTRISSCPLGPRGTSSWRRSGMKLVPDPSNPSHFRFMFAEMVNNRPVLFT

   WD40 Template    TGECLRTLSGHTSGVTSVSFS----------PDGKRLVS--------------GSED----------GTIKVWD