Input parameters:

  Query = AT5G19920.1 (Len=656)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G19920.1, Len=656):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATTAMNKPKIEQGEEVEVEAEARTFSTQIPDDREALLEFMDQRAKSIQRLKDQISSLDRKLAEERKLMADAEAKFLQID 80  
WD40-rpts                                                                                      

Query       81 RVGNGIFSKSKPKAPGKTGSILGIAEFWNEGNKTKTANENSTPQSPSEMESLKLPSIILPPSFKRRASATVRAEVNETTQ 160 
WD40-rpts                                                                                      

Query      161 AQPMATRDYNIPREDTCGPEAKRPRSIPDEVVRETQDRDKETQPMATRGYDVPKEDKSGPEARRLRSIPDEVVRESQGRD 240 
WD40-rpts                                                      (_________________WD 1__________

Query      241 NAAQPMATRDSNVPKEDKSGLDKRSRSIPNEVAQAPDNHTNKDLAKPRIRVSSNISQQGQQEKSEFRGHDELIALIGRSS 320 
WD40-rpts      ______)                                                                         

Query      321 LRPTIEGRTAGMLPSCHTKRMRSLALSPSNRELFATSALDGAVHFWKLQSDRSTATLFKTVNRVAVDQKKWAEDIAWHPH 400 
WD40-rpts            (__________________WD 2_________________)           (___________________WD

Query      401 KNALFSVYTADDGHPQISAIYLNEAGERCESQFMEDRPHSKGLINRIMFTPWDDPCFITGGSDHAVVLWRDQCENNAWKP 480 
WD40-rpts       3___________________)        (_________________WD 4_________________)          

Query      481 TLLHRDLHSSAVMGVTGMRHNNHVLSCGDDRRFVGFDAREEKVTFKHRLDNRCTNIMPNPRDVNLVMVNTRQLDRQLRLY 560 
WD40-rpts       (_______________WD 5_______________)   (__________________WD 6_________________

Query      561 DVRLPQTELFSFGWKQESSESQSALINQSWSPDGLHISSGSADPVIHIFDIRYNAPSPSLSMKAHKKRVFKAEWHSSYPL 640 
WD40-rpts      )          (_________________WD 7________________)     (_________________WD 8___

Query      641 LVSISSDLAIGIHKLW 656 
WD40-rpts      _____________)  

8 WD40-repeats found in QUERY=AT5G19920.1 (Len=656):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   209-247      2.82  231.21  0.04663       12.5%     -0.61
  WD 2:  Seg  7   327-367      9.00  486.44  1.7e-05       25.0%     44.16
  WD 3:  Seg 11   379-422      6.18  370.13  0.00064       10.0%     41.18
  WD 4:  Seg 14   431-470      7.69  432.19  9.3e-05       15.0%     45.37
  WD 5:  Seg 17   482-517      7.89  440.42  7.2e-05       20.0%     48.90
  WD 6:  Seg 20   521-561      4.63  306.01  0.00467       12.5%     43.48
  WD 7:  Seg 25   572-610      9.17  493.62  1.4e-05       35.0%     47.92
  WD 8:  Seg 28   616-654      7.91  441.30  7.0e-05       20.0%     51.32

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  209-247    -GYDVPKEDKSGPEARRLRSIP-DEVVR---ESQG-----RDNAAQPMA
   WD 2  327-367    GRTAGMLPSCHTKRMRSLALSP-SNREL--FATSA-----LDGAVHFWK
   WD 3  379-422    -KTVNRVAVDQKKWAEDIAWHP-HKNAL---FSVYTADDGHPQISAIYL
   WD 4  431-470    -SQFMEDRPHSKGLINRIMFTPWDDPCF---ITGG-----SDHAVVLWR
   WD 5  482-517    ----LLHRDLHSSAVMGVTGMR-HNNHV---LSCG-----DDRRFVGFD
   WD 6  521-561    -EKVTFKHRLDNR-CTNIMPNP-RDVNLVMVNTRQ-----LDRQLRLYD
   WD 7  572-610    FG-WKQESSESQSALINQSWSP-DGLHI---SSGS-----ADPVIHIFD
   WD 8  616-654    -PSPSLSMKAHKKRVFKAEWHS-SYPLL---VSIS-----SDLAIGIHK

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP-DGKRL---VSGS-----EDGTIKVWD