Input parameters:

  Query = AT5G19090.1 (Len=587)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G19090.1, Len=587):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKEEFMKIQTCVLKVNIHCDGCKQKVKKILQKIEGVFTTKIDAELGKVTVSGNVDPSVLIKKLLKSGKHAEIWGAPKGG 80  
WD40-rpts      (___________________________________WD 1__________________________________)     

Query       81 SNNNQNQPNLANQFKAMQIDHGGKGGGGGGGGPANNNKGQKIGGGGGGGGGGGGGGGGGPPKMVIPQLTPQQMQQLNPQQ 160 
WD40-rpts                                                                                      

Query      161 LQQLQQLQQMKGFQDLKLPPQLKGGPGPGPGSVPMNKNPQMPNNPNQKAVKFNVPDDDDEEDFSDEFDDEFDEDDDEFDD 240 
WD40-rpts                                                                                      

Query      241 DLEDDEFDDHPPPPNKMKPMMGGGNMIMPNNMMPNMMMPNAQQMLNAHKNGGGPGPAGGKIEGKGMPFPVQMGGGGGGPG 320 
WD40-rpts                                                                                      

Query      321 GKKGGPGGGGGNMGNQNQGGGGKNGGKGGGGHPLDGKMGGGGGGPNGNKGGGGVQMNGGPNGGKKGGGGGGGGGGGPMSG 400 
WD40-rpts                                                                                      

Query      401 GLPPGFRPMGGGGGGGGGPQSMSMPMGGAMGGPMGSLPQMGGGPGPMSNNMQAVQGLPAMGPGGGGGGGPSAEAPPGYFQ 480 
WD40-rpts                                                                                      

Query      481 GQVSGNGGGGQDSMPGNPYLQQQQQQQQQQYLAAVMNQQRSMGNERFQPMMYARPPPAVNYMPPQPQPHQQHPYPYPYPY 560 
WD40-rpts                                                                                      

Query      561 PPQYPPHNGDQYSDYFNDENTSSCNIM 587 
WD40-rpts                                 

1 WD40-repeats found in QUERY=AT5G19090.1 (Len=587):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-75       3.19  246.42  0.02935       27.5%     39.91

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-75     MSKEEFMKIQTCVLKVNIHCDGCKQKVKKILQKIEGVFTTKIDAELGKVTVSGNVDPSVLIKKLLKSGKHAEIWG

   WD40 Template    TGE--------CLRTLSGHT--------------SGVTSVSFSPD-GKRLVSGSED------------GTIKVWD