Input parameters:

  Query = AT5G18630.1 (Len=358)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G18630.1, Len=358):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGQKRLLFLLAVFTFLVSSSYGRGVLKLKSDDDRPVYNHTLAVTLVEYASAVYESDLTKLFTWTCERCNGLTKDFEVIEV 80  
WD40-rpts                                                                                      

Query       81 IFDVEHCLQAYVGVAKDLNAIIIAFRGTQEHSIQNWVSDLFWKQLDLNYPDMPDAMVHHGFYSAYHNTTLRPAVLDAITR 160 
WD40-rpts                                                                                      

Query      161 VKKVYGANINIIVTGHSMGGAMASFCGLDLVVNEGEENVQVMTFGQPRVGNAAFASYYSLLVPNTFRITHDRDMVPHLPP 240 
WD40-rpts           (______________________________WD 1_____________________________)          

Query      241 YYYHFPQKTYHHFPTEVWVKDFSFSNFVLFGLEKVCDNTGEDPTCSRSVRGNSISDHLRYFGVELKCESWRQCSIVMNQD 320 
WD40-rpts                                                                                      

Query      321 MERYSRKDSRGNLFLSRTVPPKDVVKTSSLSKTGISSL 358 
WD40-rpts                                            

1 WD40-repeats found in QUERY=AT5G18630.1 (Len=358):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   166-230      2.89  234.07  0.04276       17.5%     19.86

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  166-230    GANINIIVTGHSMGGAMASFCGLDLVVNEGEENVQVMTFGQPRVGNAAFASYYSLLVPNTFRITH

   WD40 Template    TGECLRTLSGHT----------------SGVTSVSFSPDGKRLVSG---------SEDGTIKVWD