Input parameters:

  Query = AT5G18525.1 (Len=1639)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G18525.1, Len=1639):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRGEDSDLCFDCLDQRINSDFSDQIVFSYGVSDSPLPFGSSAVVKVSDSSEEFSASCSSCESTSSQFILEYLRKDEHGCL 80  
WD40-rpts                                                                                      

Query       81 AKYVDKFVVKDREGNSNDAVESDECLDCSTSGSQATEDDDTENITCGSVTCEHSGSFSCWRTVAALLPIAQIRKCSASEL 160 
WD40-rpts                                                                                      

Query      161 QKLASSFHYECPEDQILASLHRLIDGKSSGQATHSFLCLLLGLPLLEEKSKLRCLRHPNLSPVLGLLTSSDCLVSVLPKA 240 
WD40-rpts                                                                                      

Query      241 PYTLENILYYSPSAIKSEWHRNFIIYQLLSALAHLHGLKVSHGDIRPSNILLSDSLWSWLTIYSKPDLGSVDANSSASRR 320 
WD40-rpts                                                                                      

Query      321 RWCVEGCYSYGLYADLKISSHLDWQTHFDKWWKGELSNFEYLLVLNKLAGRRWGDHTFHPVMPWVIDFSKKPENDSDSGW 400 
WD40-rpts                                                                                      

Query      401 RDLRKSKWRLAKGDEQLDFTYSTFEFPHHVSDECLSELAVCSYKARRLPLSVLRKAVRSVYEPNEYPSDMQRLYDWTPDE 480 
WD40-rpts                                                                                      

Query      481 CIPEFYCDPRIFCSLHPSMSDLAVPPWASSPDEFIRLHRDALESPHVSSLIHHWIDITFGYKMSGHAAITAKNVMLSSSE 560 
WD40-rpts                                                                                      

Query      561 PTVPRSVGRRQLFFRPHPVRLGFSREKEQSRNELEMHTFHGFGVDNKRSVILLADEYLEETEEASAFSDHATHLCPKYHL 640 
WD40-rpts                                                                                      

Query      641 RENLVESPLHVSYSENTKKVNTSLPGTSKNKGLSSRISLNYLLEHMEVRDEASTELQELLQWRQDFCTGNISKDIAGDIF 720 
WD40-rpts                                                                                      

Query      721 SIGCVLAELYLMKPLFNSVSLATYLEGGDLPELIKELPPPTQVIVEACIEQDWRRRPSAKSLLDSPYFSATVRSAHLFAA 800 
WD40-rpts                                                                                      

Query      801 PLQLLAKGQTRLCYAASFAKQGVLKVMGTFVAEMCAVYCLPLVTTPLSEDECELAYVLLKEFTKSLTPMAVQRLVLPSIQ 880 
WD40-rpts                                                                                      

Query      881 KILLTTGYSHLKVSLLQDSFVRELWNQIGKRVYLEMIHPLVISNLYNSPDKISASAASVLLIGSSEELGAPVTVHQTILP 960 
WD40-rpts                                                                                      

Query      961 LISYFGKGICTDGIDVLVRIGRLLGVNFIVKQMLPLLEHVVCFCIDLSSMKKPEPVHSWCSLALSDCLITLDGLVALISD 1040
WD40-rpts                                                                                      

Query     1041 ELLIHELTKGRLCLHVRVLMQKNLELRVLQFAATSLMSICQRIGQEMTALHVLPQLKELFDEFAFSEKSTDASDSLSWKI 1120
WD40-rpts                                                                                      

Query     1121 RTAEQKFHPESPIKSRMDLVLLLYPSFASLLGMEKLRQGCPTWLLLEQYLLKHHNWKWEYTGRSSRYNMEARPVLKQGPA 1200
WD40-rpts                                                                                      

Query     1201 SKHTPKVLLNGSGRSVPQSQGLRNSNHLKLHIHVPVEGQEAVLNPLVHEPWSWFPSPVTCWDGLDIGRFGNPKDENRWKI 1280
WD40-rpts                                              (_________________WD 1________________) 

Query     1281 RASVLSSARAHHGALRSLVVSEDECTVFTSGIDPGFKGSVQKWELASLSCVSSYHAHEEVVNDIGILSSTGKVASCDGTI 1360
WD40-rpts       (___________________WD 2__________________)   (________________WD 3____________

Query     1361 HVWNSQTGKLISLFSESPSDQDQASSDPSSKNNSNPCNRHASHGLSSGIFDENLYTCMHYLEYMDQLIVGTGFGALRFID 1440
WD40-rpts      ___)   (_________________WD 4________________)______________WD 5_______________)

Query     1441 LARGQKLELWGGEAIESGFTSLVSALCSGGSQTKHGDGASVSPSWIAAGFSSGQCRLFDLRENGFISSWRAHDGYVTKLV 1520
WD40-rpts                             (_______________WD 6_______________)   (________________W

Query     1521 APESHLLVSSSLDKTLRIWDLRKSWTPQPFVVKGHNDGVSGFSIWGKDVISISRNNIGIFSLAKSQDEEEQQQQRIIPQK 1600
WD40-rpts      D 7________________)   (________________WD 8________________)                   

Query     1601 LYMAEKGGRVKSDLSTICVLPFSRLFIVGAHDGHLRICC 1639
WD40-rpts         (_______________WD 9_______________)

9 WD40-repeats found in QUERY=AT5G18525.1 (Len=1639):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 25  1241-1279     5.12  326.22  0.00250       12.5%     26.41
  WD 2:  Seg 27  1282-1324     6.53  384.32  0.00041       20.0%     52.56
  WD 3:  Seg 31  1328-1364     6.95  401.71  0.00024       25.0%     43.89
  WD 4:  Seg 35  1368-1406     6.57  386.24  0.00039       15.0%     28.12
  WD 5:  Seg 37  1405-1440     6.38  378.15  0.00050       15.0%     48.93
  WD 6:  Seg 42  1464-1499     6.53  384.58  0.00041       15.0%     38.32
  WD 7:  Seg 45  1503-1540     7.84  438.35  7.7e-05       30.0%     52.70
  WD 8:  Seg 49  1544-1581     4.08  283.11  0.00949       17.5%     35.17
  WD 9:  Seg 54  1604-1639     5.51  342.22  0.00152       12.5%     37.11

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1241-1279   AVLNPLVHEPWSWFPSPVTCWDGLDIGRFGNP----KDENRWK
   WD 2 1282-1324   ASVLSSARAHHGALRSLVVSEDECTVFTSGIDPGFKGSVQKWE
   WD 3 1328-1364   LSCVSSYHAHEEVVNDIGILSST--GKVASCD----GTIHVWN
   WD 4 1368-1406   GKLISLFSESPSDQDQASSDPSSKNNSNPCNR----HASHGLS
   WD 5 1405-1440   ---LSSGIFDENLYTCMHYLEYMDQLIVGTGF----GALRFID
   WD 6 1464-1499   ---SALCSGGSQTKHGDGASVSPSWIAAGFSS----GQCRLFD
   WD 7 1503-1540   NGFISSWRAHDGYVTKL-VAPESHLLVSSSLD----KTLRIWD
   WD 8 1544-1581   SWTPQPFVVKGHNDGVSGFSIWGKDVISISRN-----NIGIFS
   WD 9 1604-1639   ---AEKGGRVKSDLSTICVLPFSRLFIVGAHD----GHLRICC

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSED----GTIKVWD