Input parameters:

  Query = AT5G17370.1 (Len=529)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G17370.1, Len=529):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVSDEKEHREQSRLQVRHNMKPELPGFYYDEEKNRYFPIKGPIPGAKSSSSSRTKQKPEPKPEQETNYQKRTKLKALKLV 80  
WD40-rpts                                                                                      

Query       81 YSRELNGNVISVNKKMSNFRDEIQKTQASYPVVWRYGSTEDIGDTALKQFQVDVQTPVGLTRKNILVAGSAGGCLSILRV 160 
WD40-rpts                                         (___________________WD 1___________________) 

Query      161 SKDRQVYDGVIECDPVSVLPCKENDTEEREAPEHILRPTQPCLVALSSISSIELIGRSDASENSHPVNRALITTLGSTGR 240 
WD40-rpts        (_______________WD 2_______________)         (_________________WD 3___________

Query      241 GSIFILNVAEEVNILTPRSLQGNVSSECTIWTSDCNISGSHAAIGTDLGAGLVDLETGVGSYFLRSKSDVFALQFHQSGN 320 
WD40-rpts      ______)         (________________WD 4________________)   (________________WD 5__

Query      321 IVHCGLRNGAIVSVDLRERPGRPFPRLTRHQIRYQSSSKTGLTSTKKQWFEVLLRSSFLTSHNILFLQLQGNINPSHVIY 400 
WD40-rpts      ______________)   (_________________WD 6________________)            (__________

Query      401 MPSSLTCLKTLKTSDQYLMASSMDGTIKLYDQRMVKRGVGVQTYEGHVNSHTPIEFGIDPSERFILSGGDDCYTRIWSIK 480 
WD40-rpts      ________WD 7__________________)      (__________________WD 8_________________)  

Query      481 SGQLMSENKFSNSVPSVVCWSADERQRDRKDSIGHGAWLGSREAIFNLL 529 
WD40-rpts       (________________WD 9________________)          

9 WD40-repeats found in QUERY=AT5G17370.1 (Len=529):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   116-159      5.25  331.46  0.00212       20.0%     37.66
  WD 2:  Seg  7   163-198      4.44  298.23  0.00594       12.5%     14.43
  WD 3:  Seg 11   208-247      7.66  430.96  9.7e-05        7.5%     24.77
  WD 4:  Seg 15   257-294      5.87  357.21  0.00095       12.5%     40.83
  WD 5:  Seg 19   298-335      7.31  416.57  0.00015       25.0%     52.38
  WD 6:  Seg 23   339-377      6.77  394.11  0.00030        7.5%     38.08
  WD 7:  Seg 27   390-431      7.55  426.38  0.00011       27.5%     48.31
  WD 8:  Seg 31   438-478      8.35  459.61  4.0e-05       27.5%     55.85
  WD 9:  Seg 35   482-519      6.34  376.39  0.00053       17.5%     47.39

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  116-159    YGST-EDIGDTALKQFQVD-VQ--TPVGLTRKNILVAGSAGGCLSILR
   WD 2  163-198    D-----RQVYDGVIECDPV-SV--LPCK----ENDTEEREAPEHILRP
   WD 3  208-247    SISS-IELIGRSDASENSH-PV--NRAL----ITTLGSTGRGSIFILN
   WD 4  257-294    -PRS-LQGNVSSECTIWTS-DC--NISG----SHAAIGT-DLGAGLVD
   WD 5  298-335    -GVG-SYFLRSK-SDVFAL-QF--HQSG----NIVHCGLRNGAIVSVD
   WD 6  339-377    -RPG-RPFPRLTRHQIRYQ-SS--SKTG----LTSTKKQWFEVLLRSS
   WD 7  390-431    QGNINPSHVIYMPSSLTCLKTL--KTSD----QYLMASSMDGTIKLYD
   WD 8  438-478    -GVG-VQTYEGHVNSHTPI-EFGIDPSE----RFILSGGDDCYTRIWS
   WD 9  482-519    -GQL-MSENKFSNSVPSVV-CW--SADE----RQRDRKDSIG-HGAWL

   WD40 Template    TGEC-LRTLSGHTSGVTSV-SF--SPDG----KRLVSGSEDGTIKVWD