Input parameters:

  Query = AT5G16750.1 (Len=876)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G16750.1, Len=876):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAPHSLKKNYRCSRSLKQFYGGGPFIVSSDGSFIACACGDVINIVDSTDSSVKSTIEGESDTLTALALSPDDKLLFSAGH 80  
WD40-rpts              (________________WD 1________________)   (_________________WD 2_________

Query       81 SRQIRVWDLETLKCIRSWKGHEGPVMGMACHASGGLLATAGADRKVLVWDVDGGFCTHYFRGHKGVVSSILFHPDSNKNI 160 
WD40-rpts      _______)   (_________________WD 3________________)   (__________________WD 4____

Query      161 LISGSDDATVRVWDLNAKNTEKKCLAIMEKHFSAVTSIALSEDGLTLFSAGRDKVVNLWDLHDYSCKATVATYEVLEAVT 240 
WD40-rpts      _____________)       (_________________WD 5________________)                    

Query      241 TVSSGTPFASFVASLDQKKSKKKESDSQATYFITVGERGVVRIWKSEGSICLYEQKSSDITVSSDDEESKRGFTAAAMLP 320 
WD40-rpts       (___________________WD 6___________________)           (__________________WD 7_

Query      321 SDHGLLCVTADQQFFFYSVVENVEETELVLSKRLVGYNEEIADMKFLGDEEQFLAVATNLEEVRVYDVATMSCSYVLAGH 400 
WD40-rpts      _________________)(______________________WD 8_____________________)   (_________

Query      401 KEVVLSLDTCVSSSGNVLIVTGSKDKTVRLWNATSKSCIGVGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVWSLDGIS 480 
WD40-rpts      _________WD 9__________________)   (_________________WD10_________________)     

Query      481 EDSEEPINLKTRSVVAAHDKDINSVAVARNDSLVCTGSEDRTASIWRLPDLVHVVTLKGHKRRIFSVEFSTVDQCVMTAS 560 
WD40-rpts              (_________________WD11________________)   (_________________WD12________

Query      561 GDKTVKIWAISDGSCLKTFEGHTSSVLRASFITDGTQFVSCGADGLLKLWNVNTSECIATYDQHEDKVWALAVGKKTEMI 640 
WD40-rpts      ________)   (_________________WD13________________)   (_________________WD14____

Query      641 ATGGGDAVINLWHDSTASDKEDDFRKEEEAILRGQELENAVLDAEYTKAIRLAFELCRPHKVFELFSGLCRKRDSDEQIV 720 
WD40-rpts      ____________)            (_________________WD15________________)                

Query      721 KALQGLEKEEFRLLFEYVREWNTKPKLCHIAQFVLYKTFNILPPTEIVQVKGIGELLEGLIPYSQRHFSRIDRFVRSSFL 800 
WD40-rpts                                                                                      

Query      801 LDYTLGEMSVIDPETVETEYPKDEKKKEKDVIAAMEQDTDELKQETPSRKRKSQKSKGKSNKKRLIAEAQGSVIAV 876 
WD40-rpts                                                                                  

15 WD40-repeats found in QUERY=AT5G16750.1 (Len=876):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-46       2.79  230.02  0.04836       25.0%     49.80
  WD 2:  Seg  5    50-88       7.99  444.67  6.3e-05       32.5%     58.57
  WD 3:  Seg  9    92-130      8.65  471.85  2.7e-05       27.5%     58.21
  WD 4:  Seg 13   134-174      8.54  467.60  3.1e-05       45.0%     56.13
  WD 5:  Seg 17   182-220      9.07  489.38  1.6e-05       37.5%     54.35
  WD 6:  Seg 23   242-285      4.94  318.76  0.00315       10.0%     42.19
  WD 7:  Seg 27   297-338      5.09  324.87  0.00260       12.5%     47.54
  WD 8:  Seg 31   339-387      5.39  337.33  0.00177       20.0%     52.46
  WD 9:  Seg 35   391-432      7.68  431.86  9.4e-05       32.5%     56.92
  WD10:  Seg 39   436-475      8.09  448.78  5.6e-05       35.0%     55.16
  WD11:  Seg 43   489-527      7.74  434.41  8.7e-05       22.5%     54.46
  WD12:  Seg 47   531-569      8.98  485.73  1.8e-05       32.5%     55.54
  WD13:  Seg 51   573-611      9.87  522.45  5.6e-06       47.5%     55.40
  WD14:  Seg 55   615-653      8.47  464.33  3.4e-05       22.5%     56.59
  WD15:  Seg 59   666-704      3.18  246.00  0.02973       12.5%     47.32

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-46     NYR--------CSRSLKQF-YGGGPFI---VSSDG-SF--IACACGD-VINIVD
   WD 2   50-88     -SS--------VKSTIEGESDTLTALA---LSPDD-KL--LFSAGHSRQIRVWD
   WD 3   92-130    -LK--------CIRSWKGHEGPVMGMA---CHASG-GL--LATAGADRKVLVWD
   WD 4  134-174    -GF--------CTHYFRGHKGVVSSIL---FHPDS-NKNILISGSDDATVRVWD
   WD 5  182-220    -KK--------CLAIMEKHFSAVTSIA---LSEDG-LT--LFSAGRDKVVNLWD
   WD 6  242-285    VSS----GTPFASFVASLDQKKSKKKE---SDSQA-TY--FITVGERGVVRIWK
   WD 7  297-338    SSD------ITVSSDDEESKRGFTAAA---MLPSD-HG--LLCVTADQQFFFYS
   WD 8  339-387    VVENVEETELVLSKRLVGYNEEIADMK---FLGDE-EQ-FLAVATNLEEVRVYD
   WD 9  391-432    -MS--------CSYVLAGHKEVVLSLDTCVSSSGN-VL--IVTGSKDKTVRLWN
   WD10  436-475    -KS--------CIGVGTGHNGDILAVA---FAKKSFSF--FVSGSGDRTLKVWS
   WD11  489-527    -LK--------TRSVVAAHDKDINSVA---VARND-SL--VCTGSEDRTASIWR
   WD12  531-569    -LV--------HVVTLKGHKRRIFSVE---FSTVD-QC--VMTASGDKTVKIWA
   WD13  573-611    -GS--------CLKTFEGHTSSVLRAS---FITDG-TQ--FVSCGADGLLKLWN
   WD14  615-653    -SE--------CIATYDQHEDKVWALA---VGKKT-EM--IATGGGDAVINLWH
   WD15  666-704    -KE--------EEAILRGQELENAVLD---AEYTK-AI--RLAFELCRPHKVFE

   WD40 Template    TGE--------CLRTLSGHTSGVTSVS---FSPDG-KR--LVSGSEDGTIKVWD