Input parameters:

  Query = AT5G15550.2 (Len=402)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G15550.2, Len=402):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDIDGEDVSRRLHVKFVTKLDSPFKVPVNSVAIPSNVTRLGLSSIVNSIIESENPEWKTEPFDFLIDGELIRMSLEEFLL 80  
WD40-rpts                                                            (_________________WD 1____

Query       81 AKGISAERTLEIEYIRAVTPRKEEEPSLHDDWVSAVNGSSPRFILTGCYDGLGRVWSSAGSCSHILEGHSGAISSVALVN 160 
WD40-rpts      _____________)     (________________WD 2________________)  (___________________W

Query      161 SNDAETVTVATASKDRTLRLFKFDPAESVDSTTKVRAYKILRGHKASVQSVSAQKSGNMVCSSSWDCTINLWNTNESTSE 240 
WD40-rpts      D 3__________________)                (_______________WD 4______________)       

Query      241 GESVSVKKRKGNNQAEESQSEGEAVTSLVGHTQCVSSVVWPEHDVIYSSSWDHSVRRWDVETGKDSLNLFCGKALNTVDV 320 
WD40-rpts                           (________________WD 5________________)   (_________________

Query      321 GGESSALIAAGGSDPILRVWDPRKPGTSAPVFQFSSHSSWISACKWHKSSWFHLLSASYDGKIMLWDLRTAVMTKHTHSF 400 
WD40-rpts      WD 6________________)      (_________________WD 7_________________)             

Query      401 PL 402 
WD40-rpts        

7 WD40-repeats found in QUERY=AT5G15550.2 (Len=402):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    55-94       4.84  314.50  0.00359       15.0%     32.67
  WD 2:  Seg  7   100-137      7.12  408.88  0.00019       25.0%     45.42
  WD 3:  Seg 10   140-182      8.38  460.66  3.8e-05       25.0%     55.73
  WD 4:  Seg 14   199-233      8.96  484.64  1.8e-05       35.0%     46.10
  WD 5:  Seg 18   262-299      7.74  434.45  8.7e-05       37.5%     54.15
  WD 6:  Seg 22   303-341      8.55  467.87  3.1e-05       20.0%     54.69
  WD 7:  Seg 26   348-387      7.99  444.68  6.3e-05       27.5%     56.99

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   55-94     PEWKTEPFDFLIDGELIRM----SLEEF-LLAKGISAERTLEIEY
   WD 2  100-137    PRKEEEPSLHDDWVSAVNG----SSP-R-FILTG-CYDGLGRVWS
   WD 3  140-182    GSCSHILEGHSGAISSVALVNSNDAETV-TVATA-SKDRTLRLFK
   WD 4  199-233    ----KILRGHKASVQSVSA----QKSGN-MVCSS-SWDCTINLWN
   WD 5  262-299    GEAVTSLVGHTQCVSSVVW-----PEHD-VIYSS-SWDHSVRRWD
   WD 6  303-341    GKDSLNLFCGKALNTVDVG----GESSA-LIAAG-GSDPILRVWD
   WD 7  348-387    SAPVFQFSSHSSWISACKW----HKSSWFHLLSA-SYDGKIMLWD

   WD40 Template    GECLRTLSGHTSGVTSVSF----SPDGK-RLVSG-SEDGTIKVWD