Input parameters:

  Query = AT5G15550.1 (Len=433)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G15550.1, Len=433):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDIDGEDVSRRLHVKFVTKLDSPFKVPVNSVAIPSNVTRLGLSSIVNSIIESENPEWKTEPFDFLIDGELIRMSLEEFLL 80  
WD40-rpts                                                                                      

Query       81 AKGISAERTLEIEYIRAVTPRKEEEPSLHDDWVSAVNGSSPRFILTGCYDGLGRVWSSAGSCSHILEGHSGAISSVALVN 160 
WD40-rpts                         (________________WD 1________________)  (___________________W

Query      161 SNDAETVTVATASKDRTLRLFKFDPAESVDSTTKVRAYKILRGHKASVQSVSAQKSGNMVCSSSWDCTINLWNTNESTSE 240 
WD40-rpts      D 2__________________)            (_________________WD 3________________)       

Query      241 GESVSVKKRKGNNQAEESQSEGEAVTSLVGHTQCVSSVVWPEHDVIYSSSWDHSVRRWDVETGKDSLNLFCGKALNTVDV 320 
WD40-rpts                           (________________WD 4________________)   (_________________

Query      321 GGESSALIAAGGSDPILRVWDPRKPGTSAPVFQFSSHSSWISACKWHKSSWFHLLSASYDGKIMLWDLRTAWPLSVIDTH 400 
WD40-rpts      WD 5________________)      (_________________WD 6_________________)   (_________

Query      401 NDKVLSADWWKGESVVSGGADSNLRISSGIAIS 433 
WD40-rpts      _______WD 7________________)     

7 WD40-repeats found in QUERY=AT5G15550.1 (Len=433):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   100-137      6.95  401.71  0.00024       25.0%     41.65
  WD 2:  Seg  9   140-182      8.25  455.45  4.5e-05       25.0%     56.28
  WD 3:  Seg 13   195-233      8.92  482.95  1.9e-05       35.0%     49.99
  WD 4:  Seg 18   262-299      7.55  426.68  0.00011       37.5%     51.26
  WD 5:  Seg 22   303-341      8.25  455.66  4.5e-05       20.0%     52.84
  WD 6:  Seg 26   348-387      7.85  439.02  7.5e-05       27.5%     55.06
  WD 7:  Seg 30   391-428      7.11  408.37  0.00020       22.5%     50.52

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  100-137    PRKEEEPSLHDDWVSAVNG----SSP-R-FILTGCYDGLGRVWS
   WD 2  140-182    GSCSHILEGHSGAISSVALVNSNDAETV-TVATASKDRTLRLFK
   WD 3  195-233    VRAYKILRGHKASVQSVSA----QKSGN-MVCSSSWDCTINLWN
   WD 4  262-299    GEAVTSLVGHTQCVSSVVW-----PEHD-VIYSSSWDHSVRRWD
   WD 5  303-341    GKDSLNLFCGKALNTVDVG----GESSA-LIAAGGSDPILRVWD
   WD 6  348-387    SAPVFQFSSHSSWISACKW----HKSSWFHLLSASYDGKIMLWD
   WD 7  391-428    AWPLSVIDTHNDKVLSADW----W-KGE-SVVSGGADSNLRISS

   WD40 Template    GECLRTLSGHTSGVTSVSF----SPDGK-RLVSGSEDGTIKVWD