Input parameters:

  Query = AT5G14530.1 (Len=330)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G14530.1, Len=330):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLTELDDGLVRRMAMGAVFSDFGGKIHSVGFHRTDDLLVTSSEDDSLRLFDIANAKQLKITYHKKHGTDRVCFTHHPSS 80  
WD40-rpts                     (________________WD 1_______________)   (____________________WD 2

Query       81 LICSSRYNLESTGESLRYLSMYDNRILRYFKGHKDRVVSLCMSPINDSFMSGSLDRSVRLWDLRVNACQGILHLRGRPAV 160 
WD40-rpts      ___________________)   (_________________WD 3________________)(_________________

Query      161 AYDQQGLVFAIAMEGGAVKLFDSRCYDKGPFDTFLVGGDTAEVNDIKFSNDGKSMLLTTTNNNIYVLDAYRGEKKCGFSL 240 
WD40-rpts      WD 4_________________)       (_________________WD 5________________)     (______

Query      241 EPSQGTPIEATFTPDGKYVLSGSGDGTLHAWNIENPSEVARWENNIGVVSCLKWAPRRAMFVAASTVLTFWIPNDGESPA 320 
WD40-rpts      ___________WD 6________________)   (________________WD 7_______________)        

Query      321 PADPPTDQQQ 330 
WD40-rpts                

7 WD40-repeats found in QUERY=AT5G14530.1 (Len=330):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    16-52       8.54  467.53  3.1e-05       27.5%     47.35
  WD 2:  Seg  6    56-100      6.98  402.85  0.00023       15.0%     56.94
  WD 3:  Seg 10   104-142     10.10  531.77  4.2e-06       35.0%     57.02
  WD 4:  Seg 14   143-182      8.74  475.63  2.4e-05       20.0%     51.00
  WD 5:  Seg 18   190-228      8.66  472.39  2.7e-05       27.5%     54.97
  WD 6:  Seg 22   234-272      9.51  507.37  9.0e-06       35.0%     55.67
  WD 7:  Seg 26   276-312      6.14  368.24  0.00068       12.5%     49.28

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   16-52     MGA---VFSDFGGKIHSVGFHRTDDLLVTSSE------DDSLRLFD
   WD 2   56-100    -AKQLKITYHKKHGTDRVCFTHHPSSLICSSRYNLESTGESLRYLS
   WD 3  104-142    -NRILRYFKGHKDRVVSLCMSPINDSFMSGSL------DRSVRLWD
   WD 4  143-182    LRVNACQGILHLRGRPAVAYDQQGLVFAIAME------GGAVKLFD
   WD 5  190-228    -PFDTFLVGGDTAEVNDIKFSNDGKSMLLTTT------NNNIYVLD
   WD 6  234-272    -KKCGFSLEPSQGTPIEATFTPDGKYVLSGSG------DGTLHAWN
   WD 7  276-312    -PSEVARWENNIGVVSCLKWAPRRAMFVAAS--------TVLTFWI

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSE------DGTIKVWD