Input parameters:

  Query = AT5G14050.1 (Len=546)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G14050.1, Len=546):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLSQNAPKSKGIKREELKKQYEDVEDEEEIGSDDDLTRGKRRKTEKEKQKLEESELVEMKKLENLIFGSLYSPVTFGKE 80  
WD40-rpts                                                                                      

Query       81 EEEDGSALFHVDRSAVRQIPDYEDDGDDDEELSDEENGQVVAIRKGEAAWEDEEEKQINVDIASVNRLRKLRKEENEGLI 160 
WD40-rpts                                                                                      

Query      161 SGSEYIARLRAHHAKLNPGTDWARPDSQIVDGESSDDDDTQDGGVDDILRTNEDLVVKSRGNKLCAGRLEYSKLVDANAA 240 
WD40-rpts                                                                       (______________

Query      241 DPSNGPINSVHFHQNAQLLLTAGLDRRLRFFQIDGKRNTKIQSIFLEDCPIRKAAFLPNGSQVIVSGRRKFFYSFDLEKA 320 
WD40-rpts      _______WD 1____________________)     (_________________WD 2________________)    

Query      321 KFDKIGPLVGREEKSLEYFEVSQDSNTIAFVGNEGYILLVSTKTKELIGTLKMNGSVRSLAFSEDGKHLLSSGGDGQVYV 400 
WD40-rpts        (_________________WD 3________________)   (________________WD 4_______________

Query      401 WDLRTMKCLYKGVDEGSTCGTSLCSSLNGALFASGTDRGIVNIYKKSEFVGGKRKPIKTVDNLTSKIDFMKFNHDAQILA 480 
WD40-rpts      _)(___________________WD 5__________________)        (__________________WD 6____

Query      481 IVSTMNKNSVKLVHVPSLTVFSNWPPPNSTMHYPRCLDFSPGSGFMAMGNAAGKVLLYKLHHYQNA 546 
WD40-rpts      _____________)(____________________WD 7___________________)       

7 WD40-repeats found in QUERY=AT5G14050.1 (Len=546):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   226-272      7.74  434.34  8.7e-05       15.0%     44.41
  WD 2:  Seg  9   278-316      7.75  434.82  8.6e-05       10.0%     55.28
  WD 3:  Seg 13   323-361      6.12  367.54  0.00069       10.0%     48.41
  WD 4:  Seg 17   365-402      8.44  463.44  3.5e-05       45.0%     55.66
  WD 5:  Seg 21   403-445      7.58  427.78  0.00011       17.5%     53.14
  WD 6:  Seg 25   454-494      6.62  388.20  0.00036       22.5%     43.39
  WD 7:  Seg 29   495-539      6.13  367.82  0.00069       12.5%     38.69

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  226-272    AGR---LEYSKLVDANAADPSNGPINSVHFHQNAQLL--LTAGLDRRLRFFQ
   WD 2  278-316    -NT---K-------IQSIFLEDCPIRKAAFLPNGSQV--IVSGRRKFFYSFD
   WD 3  323-361    -DK---I-------GPLVGREEKSLEYFEVSQDSNTI--AFVGNEGYILLVS
   WD 4  365-402    -KE---L-------IGTLKMNGS-VRSLAFSEDGKHL--LSSGGDGQVYVWD
   WD 5  403-445    LRTMKCL-------YKGVDEGSTCGTSLCSSLNGALF--ASGTDRGIVNIYK
   WD 6  454-494    -RK---P-------IKTVDNLTSKIDFMKFNHDAQILAIVSTMNKNSVKLVH
   WD 7  495-539    VPS---L--TVFSNWPPPNSTMHYPRCLDFSPGSGFM--AMGNAAGKVLLYK

   WD40 Template    TGE---C-------LRTLSGHTSGVTSVSFSPDGKRL--VSGSEDGTIKVWD