Input parameters:

  Query = AT5G13840.2 (Len=481)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G13840.2, Len=481):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASPQSTKTGLNLPAGMNQTSLRLETFSSSFRGISSLSSPSKSTCSDRFIPCRSSSRLHAFDLQDKEPTTPVKEGGNEAY 80  
WD40-rpts                                                                                      

Query       81 SRLLKSELFGSDFASPLLSPAGGQGSASSPMSPCTNMLRFKTDRSNSSPSSPFSPSILGNDNGHSSDSSPPPKPPRKVPK 160 
WD40-rpts                                              (_________________WD 1________________) 

Query      161 TPHKVLDAPSLQDDFYLNVVDWSSQNVLAVGLGTCVYLWTASNSKVTKLCDLGPNDSVCSVQWTREGSYISIGTSHGQVQ 240 
WD40-rpts             (______________WD 2_____________)(___________________WD 3________________

Query      241 VWDGTQCKRVRTMGGHQTRTGVLAWNSRILSSGSRDRNILQHDIRVQSDFVSKLVGHKSEVCGLKWSHDDRELASGGNDN 320 
WD40-rpts      __)   (________________WD 4_______________)    (_________________WD 5___________

Query      321 QLLVWNNHSQQPILKLTEHTAAVKAITWSPHQSSLLASGGGTADRCIRFWNTTNGNQLNSIDTGSQVCNLAWSKNVNEIV 400 
WD40-rpts      _____)   (__________________WD 6__________________)   (_________________WD 7____

Query      401 STHGYSQNQIMLWKYPSMSKVATLTGHSMRVLYLATSPDGQTIVTGAGDETLRFWNVFPSVKMQTPVKDTGLWSLGRTQI 480 
WD40-rpts      _____________)   (_________________WD 8________________)                        

Query      481 R 481 
WD40-rpts       

8 WD40-repeats found in QUERY=AT5G13840.2 (Len=481):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   121-159      5.00  321.25  0.00291       10.0%     -4.99
  WD 2:  Seg  4   168-200      3.02  239.59  0.03615        7.5%     40.42
  WD 3:  Seg  7   201-243      7.60  428.57  0.00010       27.5%     53.58
  WD 4:  Seg 11   247-283      6.64  388.81  0.00036       27.5%     56.35
  WD 5:  Seg 15   288-326      9.23  495.98  1.3e-05       32.5%     56.06
  WD 6:  Seg 19   330-371      7.62  429.52  0.00010       27.5%     46.06
  WD 7:  Seg 23   375-414      5.47  340.79  0.00159       25.0%     51.43
  WD 8:  Seg 27   418-456      9.74  516.85  6.7e-06       35.0%     56.56

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  121-159    -KTDRSNSS---PSSPFSPSILGNDNGHSSDS---SPPPKPPRKVP
   WD 2  168-200    ------APS---LQDDFYLNV-VDWSSQNVLA---VGLGTCVYLWT
   WD 3  201-243    ASNSKVTKLCDLGPNDSVCSVQWTREGSYISI---GTSHGQVQVWD
   WD 4  247-283    -CKRVRTMG---GHQTRTGVLAW--NSRILSS---GSRDRNILQHD
   WD 5  288-326    -SDFVSKLV---GHKSEVCGLKWSHDDRELAS---GGNDNQLLVWN
   WD 6  330-371    -QQPILKLT---EHTAAVKAITWSPHQSSLLASGGGTADRCIRFWN
   WD 7  375-414    -GNQLNSID---TG-SQVCNLAWSKNVNEIVS-THGYSQNQIMLWK
   WD 8  418-456    -MSKVATLT---GHSMRVLYLATSPDGQTIVT---GAGDETLRFWN

   WD40 Template    TGECLRTLS---GHTSGVTSVSFSPDGKRLVS---GSEDGTIKVWD