Input parameters:

  Query = AT5G13840.1 (Len=481)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G13840.1, Len=481):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASPQSTKTGLNLPAGMNQTSLRLETFSSSFRGISSLSSPSKSTCSDRFIPCRSSSRLHAFDLQDKEPTTPVKEGGNEAY 80  
WD40-rpts                                                                                      

Query       81 SRLLKSELFGSDFASPLLSPAGGQGSASSPMSPCTNMLRFKTDRSNSSPSSPFSPSILGNDNGHSSDSSPPPKPPRKVPK 160 
WD40-rpts              (_________________________________WD 1________________________________) 

Query      161 TPHKVLDAPSLQDDFYLNVVDWSSQNVLAVGLGTCVYLWTASNSKVTKLCDLGPNDSVCSVQWTREGSYISIGTSHGQVQ 240 
WD40-rpts        (________________WD 2________________)(___________________WD 3________________

Query      241 VWDGTQCKRVRTMGGHQTRTGVLAWNSRILSSGSRDRNILQHDIRVQSDFVSKLVGHKSEVCGLKWSHDDRELASGGNDN 320 
WD40-rpts      __)   (________________WD 4_______________)    (_________________WD 5___________

Query      321 QLLVWNNHSQQPILKLTEHTAAVKAITWSPHQSSLLASGGGTADRCIRFWNTTNGNQLNSIDTGSQVCNLAWSKNVNEIV 400 
WD40-rpts      _____)   (__________________WD 6__________________)   (_________________WD 7____

Query      401 STHGYSQNQIMLWKYPSMSKVATLTGHSMRVLYLATSPDGQTIVTGAGDETLRFWNVFPSVKMQTPVKDTGLWSLGRTQI 480 
WD40-rpts      _____________)   (_________________WD 8________________)                        

Query      481 R 481 
WD40-rpts       

8 WD40-repeats found in QUERY=AT5G13840.1 (Len=481):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    89-159      3.02  239.35  0.03641       12.5%      4.12
  WD 2:  Seg  2   163-200      3.92  276.40  0.01167       10.0%     44.55
  WD 3:  Seg  6   201-243      7.48  423.72  0.00012       27.5%     53.89
  WD 4:  Seg 10   247-283      6.49  382.72  0.00043       27.5%     53.31
  WD 5:  Seg 14   288-326      9.10  490.64  1.5e-05       32.5%     51.26
  WD 6:  Seg 18   330-371      7.48  423.62  0.00012       27.5%     44.48
  WD 7:  Seg 22   375-414      5.52  342.50  0.00151       25.0%     49.47
  WD 8:  Seg 26   418-456      9.63  512.34  7.7e-06       35.0%     54.71

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   89-159    FGSDFASPLLSPAGGQGSASSPMSPCTNMLRFKTDRSNSS---PSSPFSPSILGNDNGHSSDS---SPPPKPPRKVP
   WD 2  163-200    -HKVL-------------------------------DAPS---LQDDFYLNV-VDWSSQNVLA---VGLGTCVYLWT
   WD 3  201-243    ASNSK-------------------------------VTKLCDLGPNDSVCSVQWTREGSYISI---GTSHGQVQVWD
   WD 4  247-283    -CKRV-------------------------------RTMG---GHQTRTGVLAW--NSRILSS---GSRDRNILQHD
   WD 5  288-326    -SDFV-------------------------------SKLV---GHKSEVCGLKWSHDDRELAS---GGNDNQLLVWN
   WD 6  330-371    -QQPI-------------------------------LKLT---EHTAAVKAITWSPHQSSLLASGGGTADRCIRFWN
   WD 7  375-414    -GNQL-------------------------------NSID---TG-SQVCNLAWSKNVNEIVS-THGYSQNQIMLWK
   WD 8  418-456    -MSKV-------------------------------ATLT---GHSMRVLYLATSPDGQTIVT---GAGDETLRFWN

   WD40 Template    TGECL-------------------------------RTLS---GHTSGVTSVSFSPDGKRLVS---GSEDGTIKVWD