Input parameters:

  Query = AT5G13680.1 (Len=1319)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G13680.1, Len=1319):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKNLKLFSEVPQNIQLHSTEEVVQFAAYDIDQSRLFFASSANFVYALQLSSFQNESAGAKSAMPVEVCSIDIEPGDFITA 80  
WD40-rpts                                                      (_________________________WD 1__

Query       81 FDYLAEKESLLIGTSHGLLLVHNVESDVTELVGNIEGGVKCISPNPTGDLLGLITGLGQLLVMTYDWALMYEKALGEVPE 160 
WD40-rpts      ______________________)  (_________________WD 2________________)                

Query      161 GGYVRETNDLSVNCGGISISWRGDGKYFATMGEVYESGCMSKKIKIWESDSGALQSSSETKEFTQGILEWMPSGAKIAAV 240 
WD40-rpts                                                         (____________________WD 3____

Query      241 YKRKSDDSSPSIAFFERNGLERSSFRIGEPEDATESCENLKWNSASDLLAGVVSCKTYDAIRVWFFSNNHWYLKQEIRYP 320 
WD40-rpts      _______________)       (__________________WD 4__________________)               

Query      321 REAGVTVMWDPTKPLQLICWTLSGQVSVRHFMWVTAVMEDSTAFVIDNSKILVTPLSLSLMPPPMYLFSLSFSSAVRDIA 400 
WD40-rpts                                                                                      

Query      401 YYSRNSKNCLAVFLSDGNLSFVEFPAPNTWEDLEGKDFSVEISDCKTALGSFVHLLWLDVHSLLCVSAYGSSHNKCLSSG 480 
WD40-rpts                                                                                      

Query      481 GYDTELHGSYLQEVEVVCHEDHVPDQVTCSGFKASITFQTLLESPVLALAWNPSKRDSAFVEFEGGKVLGYASRSEIMET 560 
WD40-rpts                                                                                      

Query      561 RSSDDSVCFPSTCPWVRVAQVDASGVHKPLICGLDDMGRLSINGKNLCNNCSSFSFYSELANEVVTHLIILTKQDFLFIV 640 
WD40-rpts                                                                                      

Query      641 DTKDVLNGDVALGNVFFVIDGRRRDEENMSYVNIWERGAKVIGVLNGDEAAVILQTMRGNLECIYPRKLVLSSITNALAQ 720 
WD40-rpts                                                                                      

Query      721 QRFKDAFNLVRRHRIDFNVIVDLYGWQAFLQSAVAFVEQVNNLNHVTEFVCAMKNEDVTETLYKKFSFSKKGDEVFRVKD 800 
WD40-rpts                                                                                      

Query      801 SCSNKVSSVLQAIRKALEEHIPESPSRELCILTTLARSDPPAIEESLLRIKSVREMELLNSSDDIRKKSCPSAEEALKHL 880 
WD40-rpts                                                                                      

Query      881 LWLLDSEAVFEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELEKMPESLMHFKIDIKLQRFDSALRNIVSAGVGYFPDC 960 
WD40-rpts                                                                                      

Query      961 MNLIKKNPQLFPLGLLLITDPEKKLVVLEAWADHLIDEKRFEDAATTYLCCCKLEKASKAYRECGDWSGVLRVGALMKLG 1040
WD40-rpts                                                                                      

Query     1041 KDEILKLAYELCEEVNALGKPAEAAKIALEYCSDISGGISLLINAREWEEALRVAFLHTADDRISVVKSSALECASGLVS 1120
WD40-rpts                                                                                      

Query     1121 EFKESIEKVGKYLTRYLAVRQRRLLLAAKLKSEERSVVDLDDDTASEASSNLSGMSAYTLGTRRGSAASVSSSNATSRAR 1200
WD40-rpts                                                                                      

Query     1201 DLRRQRKSGKIRAGSAGEEMALVDHLKGMRMTDGGKRELKSLLICLVTLGEMESAQKLQQTAENFQVSQVAAVELAHDTV 1280
WD40-rpts                                                                                      

Query     1281 SSESVDEEVYCFERYAQKTRSTARDSDAFSWMLKVFISP 1319
WD40-rpts                                             

4 WD40-repeats found in QUERY=AT5G13680.1 (Len=1319):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    49-103      3.66  266.01  0.01608       15.0%     40.16
  WD 2:  Seg  7   106-144      5.13  326.63  0.00247       20.0%     51.07
  WD 3:  Seg 14   212-256      3.12  243.54  0.03204       10.0%     31.32
  WD 4:  Seg 17   264-305      3.08  242.08  0.03351       15.0%     33.17

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   49-103    LSSFQNESAGAKSAMPVEVCSIDIEPGDFITAFDYLAEKESLLI------GTSHGL---LLVHN
   WD 2  106-144    -S---------------DVTELVGNIEGGVKCISPNPTGDLLGL------ITGLGQ---LLVMT
   WD 3  212-256    -G---------------ALQSSSETKEFTQGILEWMPSGAKIAAVYKRKSDDSSPS---IAFFE
   WD 4  264-305    -S---------------FRIGEPEDATESCENLKWNSASDLLAG------VVSCKTYDAIRVWF

   WD40 Template    TG---------------ECLRTLSGHTSGVTSVSFSPDGKRLVS------GSEDGT---IKVWD