Input parameters:

  Query = AT5G13590.1 (Len=1168)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G13590.1, Len=1168):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSGSQEPRIRPSTWSCSDIPIKKRKYLVQPQMEEAVSTQIPQPNEQGDTRSAHADETQKMTGREPTSSLPSVPVGISGKG 80  
WD40-rpts                                                                                      

Query       81 KSIGNIVFDQTRVKFEKPSSPIHSSPLAGFDIPSSSNVLGSSIHFPMGKLPVGAEHAGLVVPSNQTRMKVEKTVLKTHDI 160 
WD40-rpts                                                                                      

Query      161 VRKTGDKETLRGECQTEASSGAKTVSLQLSCNTKNNSPYWKDEEPTELNLSLSKGVCPAHNTDSTSTKSGNSGLNRENWD 240 
WD40-rpts                                                                                      

Query      241 LNTTMDVWEDALDRTRGAFLNSNRSLRDIERSSCRDTTAITKSVSERQKESVGFSSPKVTLMQFDNHVNPTCSLSLGLSS 320 
WD40-rpts                                                                                      

Query      321 YPPIEKSPSLPATTSEARAGNVCSVNLRTVKSEIVEESVRQATESTQVSPIGLSIKGLKHEGIGRFSQGNSPSFGILKTV 400 
WD40-rpts                                                                                      

Query      401 VPISIKAEPNTFSQSEVFNRKDGMLNHPHTPIMQSNEIPDLPTSSTPYQKDKYLPCSNGISNAPMPLSGMTIIPGVQSDP 480 
WD40-rpts                                                                                      

Query      481 DCTSKENSGQSSSLANGKLREVLKHGGVYTTYSGHGDHNLNASGVNVTSLTEEKILDDCKPCISKELPCNSRGTDELSRN 560 
WD40-rpts                              (_______________________WD 1______________________)     

Query      561 DEEKITLPGKELEEQLYSYGFESDRGYDLSRVIKEQVGKRNLCDDGKVQGPAAVFTESNEVAHPECGGSETEQRNINVPC 640 
WD40-rpts                                                                                      

Query      641 HVHFHNSNHVEEKGSQPALLGYTGETEGRIVQDGEGTSGVSTVSGGIENPEIVDNSSPVSLKAEMSTIDNDSPMECSDGS 720 
WD40-rpts                                                                                      

Query      721 QSRIINLTQVKSPVKALDASGSFVPPRMERDRFHDFPLEPREYTFRGSDESCKFSRERYHGRIMRSPRLNFIPDRRRLPD 800 
WD40-rpts                                                                                      

Query      801 NTESNLHDQDTKKFEFDNHGNTRRGGAFMSNFQRGRRPANDGVTPYAHSFPRRSPSFSYNRGPTNKEDTSAFHGFRDGEK 880 
WD40-rpts                                                                                      

Query      881 FTRGLQCNNTEPLFMNHQRPYRGRSGFARGRTKFVNNPKRDFPGFRSRSPVRSRERSDGSSSSFRNRSQEEFSGHTDFSH 960 
WD40-rpts                                                                                      

Query      961 RRSPSGYKVERMSSPDHSGYSREMVVRRHNSPPFSHRPSNAGRGRGYARGRGYVRGRGYGRDGNSFRKPSDHVVHRNHGN 1040
WD40-rpts                                                                                      

Query     1041 MNNLDPRERVDYSDDFFEGQIHSERFGVDVNAERRRFGYRHDGTSSSFRPSFNNDGCAPTNVENDPDAVRFQQDPRIKIE 1120
WD40-rpts                                                                                      

Query     1121 EQGSLMEIDGENKNSTENASGRTKNMEEEETSKNSKIWQPDELGGDGF 1168
WD40-rpts                                                      

1 WD40-repeats found in QUERY=AT5G13590.1 (Len=1168):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   505-555      3.44  256.74  0.02139       32.5%      7.97

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  505-555    HGGVYTTYSGHGDHNLNASGVNVTSLTEEKILDDCKPCISKELPCNSRGTD

   WD40 Template    TGECLRTLSGH------TSGVTSVSFS-----PDGKRLVSGSEDGTIKVWD