Input parameters:

  Query = AT5G13530.2 (Len=1624)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G13530.2, Len=1624):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVGRVKVPCCSVCHTRYNEDERVPLLLQCGHGFCKDCLSKMFSTSSDTTLTCPRCRHVSVVGNSVQGLRKNYAMLALIHA 80  
WD40-rpts                                                                                      

Query       81 ASGGANFDCDYTDDEDDDDEEDGSDEDGARAARGFHASSSINSLCGPVIEVGAHPEMKLVRQIGEESSSGGFGGVEMWDA 160 
WD40-rpts                                                                                      

Query      161 TVAGGGGRCKHRVAVKKMTLTEDMDVEWMQGQLESLRRASMWCRNVCTFHGVVKMDGSLCLLMDRCFGSVQSEMQRNEGR 240 
WD40-rpts                                                                                      

Query      241 LTLEQILRYGADVARGVAELHAAGVICMNIKPSNLLLDASGNAVVSDYGLAPILKKPTCQKTRPEFDSSKVTLYTDCVTL 320 
WD40-rpts                                                                                      

Query      321 SPHYTAPEAWGPVKKLFWEDASGVSPESDAWSFGCTLVEMCTGSTPWDGLSREEIFQAVVKARKVPPQYERIVGVGIPRE 400 
WD40-rpts                                                                                      

Query      401 LWKMIGECLQFKPSKRPTFNAMLATFLRHLQEIPRSPSASPDNGIAKICEVNIVQAPRATNIGVFQDNPNNLHRVVLEGD 480 
WD40-rpts                                                                                      

Query      481 FEGVRNILAKAAAGGGGSSVRSLLEAQNADGQSALHLACRRGSAELVEAILEYGEANVDIVDKDGDPPLVFALAAGSPQC 560 
WD40-rpts                                                                                      

Query      561 VHVLIKKGANVRSRLREGSGPSVAHVCSYHGQPDCMRELLVAGADPNAVDDEGETVLHRAVAKKYTDCAIVILENGGSRS 640 
WD40-rpts                                                                                      

Query      641 MTVSNAKCLTPLHMCVATWNVAVIKRWVEVSSPEEISQAINIPSPVGTALCMAASIRKDHEKGRELVQILLAAGADPTAQ 720 
WD40-rpts                                                                                      

Query      721 DAQHGRTALHTAAMANNVELVRVILDAGVNANIRNVHNTIPLHMALARGANSCVSLLLESGSDCNIQDDEGDNAFHIAAD 800 
WD40-rpts                                                                                      

Query      801 AAKMIRENLDWLIVMLRSPDAAVDVRNHSGKTVRDFLEALPREWISEDLMEALLKRGVHLSPTIYEVGDWVKFKRGITTP 880 
WD40-rpts                                                                                      

Query      881 LHGWQGAKPKSVGFVQTILEKEDMIIAFCSGEARVLANEVVKLIPLDRGQHVRLRADVKEPRFGWRGQSRDSVGTVLCVD 960 
WD40-rpts                                                                                      

Query      961 EDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRQNLTSAKHGFGSVVPGSMGIVYCVRPDSSLLVELSYLPNPWH 1040
WD40-rpts                                                                                      

Query     1041 CEPEEVEPVAPFRIGDRVCVKRSVAEPRYAWGGETHHSVGKISEIENDGLLIIEIPNRPIPWQADPSDMEKIDDFKVGDW 1120
WD40-rpts                                                                                      

Query     1121 VRVKASVSSPKYGWEDITRNSIGVMHSLDEDGDVGIAFCFRSKPFSCSVTDVEKVTPFHVGQEIHMTPSITQPRLGWSNE 1200
WD40-rpts                                                                                      

Query     1201 TPATIGKVMRIDMDGTLSAQVTGRQTLWRVSPGDAELLSGFEVGDWVRSKPSLGNRPSYDWSNVGRESIAVVHSIQETGY 1280
WD40-rpts                                                                                      

Query     1281 LELACCFRKGRWSTHYTDLEKIPALKVGQFVHFQKGITEPRWGWRAAKPDSRGIITTVHADGEVRVAFFGLPGLWRGDPA 1360
WD40-rpts                                                                                      

Query     1361 DLEVEPMFEVGEWVRLREGVSCWKSVGPGSVGVVHGVGYEGDEWDGTTSVSFCGEQERWAGPTSHLEKAKKLVVGQKTRV 1440
WD40-rpts                                                                                      

Query     1441 KLAVKQPRFGWSGHSHGSVGTISAIDADGKLRIYTPAGSKTWMLDPSEVETIEEEELKIGDWVRVKASITTPTYQWGEVN 1520
WD40-rpts           (_________________WD 1_________________)                                   

Query     1521 PSSTGVVHRMEDGDLCVSFCFLDRLWLCKAGELERIRPFRIGDRVKIKDGLVTPRWGWGMETHASKGHVVGVDANGKLRI 1600
WD40-rpts                                                                                      

Query     1601 KFLWREGRPWIGDPADIVLDETSG 1624
WD40-rpts                              

1 WD40-repeats found in QUERY=AT5G13530.2 (Len=1624):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 34  1446-1485     2.85  232.35  0.04506       17.5%     18.54

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1446-1485   QPRFGWSGHSHGSVGTISAIDADGKLRIYTPAGSKTWMLD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD