Input parameters:

  Query = AT5G13480.2 (Len=653)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G13480.2, Len=653):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMRQSSASSTNINPDYHHPSGPFDPNVDSFGAKRMRKHTQRRAVDYTSTVVRYIQFNELILYMELKVESVYSIYVFVQAR 80  
WD40-rpts      (_____________WD 1____________)                         (_________________WD 2__

Query       81 TWQRDSRDRTTLQPTPAAAVDMLPTVAYSDNPSTSFAAKFVHASLNKNRCSINRVLWTPSGRRLITGSQSGEFTLWNGQS 160 
WD40-rpts      ______________)                       (_________________WD 3________________)   

Query      161 FNFEMILQAHDQPIRSMVWSHNENYMVSGDDGGTLKYWQNNMNNVKANKTAHKESIRDLSFCKTDLKFCSCSDDTTVKVW 240 
WD40-rpts      (_________________WD 4________________)   (_________________WD 5________________

Query      241 DFTKCVDESSLTGHGWDVKSVDWHPTKSLLVSGGKDQLVKLWDTRSGRELCSLHGHKNIVLSVKWNQNGNWLLTASKDQI 320 
WD40-rpts      )(__________________WD 6__________________)   (_________________WD 7____________

Query      321 IKLYDIRTMKELQSFRGHTKDVTSLAWHPCHEEYFVSGSSDGSICHWIVGHENPQIEIPNAHDNSVWDLAWHPIGYLLCS 400 
WD40-rpts      ____)   (_________________WD 8_________________)(___________________WD 9________

Query      401 GSNDHTTKFWCRNRPADNPRDVLMQNQGYNEQGFGRQPDNFQPSEASPIPGAFVPGLTRNEGTIPGIGIAMPFDASSQGD 480 
WD40-rpts      __________)                                                                     

Query      481 HKQPLPGSMALGAPPLPPGPHPSLLGSGQQQGYQQQQQHQGHPQQMLPMPNMPHHQLPPSSHMPLHPHHLPRPMQMPPHG 560 
WD40-rpts                                                                                      

Query      561 HMPPPSMPMSHQMPGSMGMQGGMNPQMSQSHFMGAPSGVFQGQPNSGGPQMYPQGRGGFNRPQMIPGYNNPFQQQQQPPL 640 
WD40-rpts                                                                                      

Query      641 PPGPPPNNNQQHQ 653 
WD40-rpts                   

9 WD40-repeats found in QUERY=AT5G13480.2 (Len=653):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-31       4.33  293.36  0.00691       17.5%     16.87
  WD 2:  Seg  5    57-95       6.63  388.51  0.00036       15.0%     40.88
  WD 3:  Seg 10   119-157      8.22  454.36  4.7e-05       25.0%     52.36
  WD 4:  Seg 14   161-199      8.77  476.85  2.3e-05       27.5%     55.79
  WD 5:  Seg 18   203-241      9.25  496.95  1.2e-05       27.5%     54.96
  WD 6:  Seg 22   242-283      9.52  507.93  8.9e-06       40.0%     53.56
  WD 7:  Seg 26   287-325      9.68  514.49  7.2e-06       37.5%     55.26
  WD 8:  Seg 30   329-368      8.46  464.09  3.5e-05       40.0%     55.43
  WD 9:  Seg 34   369-411      8.94  483.76  1.9e-05       32.5%     52.45

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-31     -------------MMRQSSASSTNINP-DYH-HPSGPFDPNVDSFG
   WD 2   57-95     -N---ELI--LYMELKVESVYSIYVFV-QARTWQRDSRDRTTLQPT
   WD 3  119-157    -K---FVH--ASLNKNRCSINRVLWTP-SGRRLITGSQSGEFTLWN
   WD 4  161-199    -F---NFE--MILQAHDQPIRSMVWSH-NENYMVSGDDGGTLKYWQ
   WD 5  203-241    -N---NVK--ANKTAHKESIRDLSFCK-TDLKFCSCSDDTTVKVWD
   WD 6  242-283    FT---KCVDESSLTGHGWDVKSVDWHP-TKSLLVSGGKDQLVKLWD
   WD 7  287-325    -G---REL--CSLHGHKNIVLSVKWNQ-NGNWLLTASKDQIIKLYD
   WD 8  329-368    -M---KEL--QSFRGHTKDVTSLAWHPCHEEYFVSGSSDGSICHWI
   WD 9  369-411    VGHENPQI--EIPNAHDNSVWDLAWHP-IGYLLCSGSNDHTTKFWC

   WD40 Template    TG---ECL--RTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD