Input parameters:

  Query = AT5G13480.1 (Len=647)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G13480.1, Len=647):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYAGGDMHRGSQMPQPPMMRQSSASSTNINPDYHHPSGPFDPNVDSFGAKRMRKHTQRRAVDYTSTVVRYIQARTWQRDS 80  
WD40-rpts                                                                                      

Query       81 RDRTTLQPTPAAAVDMLPTVAYSDNPSTSFAAKFVHASLNKNRCSINRVLWTPSGRRLITGSQSGEFTLWNGQSFNFEMI 160 
WD40-rpts                                      (_________________WD 1________________)   (_____

Query      161 LQAHDQPIRSMVWSHNENYMVSGDDGGTLKYWQNNMNNVKANKTAHKESIRDLSFCKTDLKFCSCSDDTTVKVWDFTKCV 240 
WD40-rpts      ____________WD 2________________)   (_________________WD 3________________)(____

Query      241 DESSLTGHGWDVKSVDWHPTKSLLVSGGKDQLVKLWDTRSGRELCSLHGHKNIVLSVKWNQNGNWLLTASKDQIIKLYDI 320 
WD40-rpts      ______________WD 4__________________)   (_________________WD 5________________) 

Query      321 RTMKELQSFRGHTKDVTSLAWHPCHEEYFVSGSSDGSICHWIVGHENPQIEIPNAHDNSVWDLAWHPIGYLLCSGSNDHT 400 
WD40-rpts        (_________________WD 6_________________)(___________________WD 7______________

Query      401 TKFWCRNRPADNPRDVLMQNQGYNEQGFGRQPDNFQPSEASPIPGAFVPGLTRNEGTIPGIGIAMPFDASSQGDHKQPLP 480 
WD40-rpts      ____)        (________________WD 8_______________)                              

Query      481 GSMALGAPPLPPGPHPSLLGSGQQQGYQQQQQHQGHPQQMLPMPNMPHHQLPPSSHMPLHPHHLPRPMQMPPHGHMPPPS 560 
WD40-rpts                                                                                      

Query      561 MPMSHQMPGSMGMQGGMNPQMSQSHFMGAPSGVFQGQPNSGGPQMYPQGRGGFNRPQMIPGYNNPFQQQQQPPLPPGPPP 640 
WD40-rpts                                                                                      

Query      641 NNNQQHQ 647 
WD40-rpts             

8 WD40-repeats found in QUERY=AT5G13480.1 (Len=647):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   113-151      8.31  457.96  4.2e-05       25.0%     55.74
  WD 2:  Seg 10   155-193      8.80  478.23  2.2e-05       27.5%     56.45
  WD 3:  Seg 14   197-235      9.32  499.83  1.1e-05       27.5%     55.83
  WD 4:  Seg 18   236-277      9.51  507.35  9.0e-06       40.0%     55.01
  WD 5:  Seg 22   281-319      9.64  512.81  7.6e-06       37.5%     53.95
  WD 6:  Seg 26   323-362      8.39  461.40  3.8e-05       40.0%     58.58
  WD 7:  Seg 30   363-405      8.88  481.34  2.0e-05       32.5%     54.76
  WD 8:  Seg 33   414-450      4.03  281.05  0.01011       15.0%     24.34

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  113-151    -K---FVH--ASLNKNRCSINRVLWTP-SGRRLITGSQSGEFTLWN
   WD 2  155-193    -F---NFE--MILQAHDQPIRSMVWSH-NENYMVSGDDGGTLKYWQ
   WD 3  197-235    -N---NVK--ANKTAHKESIRDLSFCK-TDLKFCSCSDDTTVKVWD
   WD 4  236-277    FT---KCVDESSLTGHGWDVKSVDWHP-TKSLLVSGGKDQLVKLWD
   WD 5  281-319    -G---REL--CSLHGHKNIVLSVKWNQ-NGNWLLTASKDQIIKLYD
   WD 6  323-362    -M---KEL--QSFRGHTKDVTSLAWHPCHEEYFVSGSSDGSICHWI
   WD 7  363-405    VGHENPQI--EIPNAHDNSVWDLAWHP-IGYLLCSGSNDHTTKFWC
   WD 8  414-450    -R---DVL--MQNQGYN--EQGFGRQP-DNFQPSEASPIPGAFVPG

   WD40 Template    TG---ECL--RTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD