Input parameters:

  Query = AT5G13000.2 (Len=1914)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G13000.2, Len=1914):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSATRGGPDQGPSQPQQRRIIRTQTAGNLGESFDSEVVPSSLVEIAPILRVANEVESSNPRVAYLCRFYAFEKAHRLDPT 80  
WD40-rpts                                                                                      

Query       81 SSGRGVRQFKTALLQRLEREHDPTLMGRVKKSDAREMQSFYQHYYKKYIQALHNAADKADRAQLTKAYQTANVLFEVLKA 160 
WD40-rpts                                                                                      

Query      161 VNLTQSIEVDREILEAQDKVAEKTQLYVPYNILPLDPDSANQAIMRYPEIQAAVLALRNTRGLPWPEGHKKKKDEDMLDW 240 
WD40-rpts                                                                                      

Query      241 LQEMFGFQKDNVANQREHLILLLANVHIRQFPKPDQQPKLDDQALTEVMKKLFKNYKKWCKYLGRKSSLWLPTIQQEMQQ 320 
WD40-rpts                                                                                      

Query      321 RKLLYMALYLLIWGEAANLRFMPECLCYIYHHMAFELYGMLAGNVSPMTGENVKPAYGGEEDAFLRKVVTPIYEVIQMEA 400 
WD40-rpts                                                                                      

Query      401 QRSKKGKSKHSQWRNYDDLNEYFWSVDCFRLGWPMRADADFFCLPVAVPNTEKDGDNSKPIVARDRWVGKVNFVEIRSFW 480 
WD40-rpts                                                                                      

Query      481 HVFRSFDRMWSFYILCLQAMIIMAWDGGQPSSVFGADVFKKVLSVFITAAIMKLGQAVLDVILNFKAHQSMTLHVKLRYI 560 
WD40-rpts                                                                                      

Query      561 LKVFSAAAWVIILPVTYAYSWKDPPAFARTIKSWFGSAMHSPSLFIIAVVSYLSPNMLAGVMFLFPLLRRFLERSNYRIV 640 
WD40-rpts                                                                                      

Query      641 MLMMWWSQPRLYVGRGMHESAFSLFKYTMFWVLLIATKLAFSYYIEIRPLVAPTQAIMKARVTNFQWHEFFPRAKNNIGV 720 
WD40-rpts                                                                                      

Query      721 VIALWAPIILVYFMDSQIWYAIFSTLFGGIYGAFRRLGEIRTLGMLRSRFESLPGAFNDRLIPDGKNQQKKKGIRATLSH 800 
WD40-rpts                                                                                      

Query      801 NFTEDKVPVNKEKEAARFAQLWNTIISSFREEDLISDREMDLLLVPYWADRDLDLIQWPPFLLASKIPIALDMAKDSNGK 880 
WD40-rpts                                                                                      

Query      881 DRELKKRIESDTYMKCAVRECYASFKNIIKFVVQGNREKEVIEIIFAEVDKHIDTGDLIQEYKMSALPSLYDHFVKLIKY 960 
WD40-rpts                                                                                      

Query      961 LLDNKEEDRDHVVILFQDMLEVVTRDIMMEDYNISSLVDSSHGGTWHGGMIPLEQQYQLFASSGAIRFPIEPVTEAWKEK 1040
WD40-rpts                                                                                      

Query     1041 IKRIYLLLTTKESAMDVPSNLEARRRISFFSNSLFMDMPMAPKVRNMLSFSVLTPYYTEEVLFSLRDLETPNEDGVSILF 1120
WD40-rpts                                                                                      

Query     1121 YLQKIFPDEWNNFLERVKCLSEEELKESDELEEELRLWASYRGQTLTRTGMMYYRKALELQAFLDMAMHEDLMEGYKAVE 1200
WD40-rpts                                                                                      

Query     1201 LNSENNSRGERSLWAQCQAVADMKFTYVVSCQQYGIHKRSGDPRAQDILRLMTRYPSLRVAYIDEVEEPVKDKSKKGNQK 1280
WD40-rpts                                                                                      

Query     1281 VYYSVLVIYRIRLPGPAILGEGKPENQNHAIIFSRGEGLQTIDMNQDNYMEEALKMRNLLQEFLTKHDGVRHPSILGLRE 1360
WD40-rpts                                                                                      

Query     1361 HIFTGSVSSLAWFMSNQETSFVTIGQRLLANPLRVRFHYGHPDVFDRLFHLTRGGVSKASKVINLSEDIFAGFNSTLREG 1440
WD40-rpts                                                                                      

Query     1441 NVTHHEYIQVGKGRDVGLNQISMFEAKIANGNGEQTLSRDIYRLGHRFDFFRMMSCYFTTVGFYFSTLITVLTVYIFLYG 1520
WD40-rpts                                                                                      

Query     1521 RLYLVLSGLEQGLSTQKGIRDNTPLQIALASQSFVQIGFLMALPMLMEIGLERGFRTALSEFVLMQLQLAPVFFTFSLGT 1600
WD40-rpts                                                                                      

Query     1601 KTHYYGRTLLHGGAKYRSTGRGFVVFHAKFADNYRLYSRSHFVKGLEMMLLLVVYQIFGSAYRGVLAYLLITISMWFMVG 1680
WD40-rpts                        (________________________________________________WD 1_________

Query     1681 TWLFAPFLFNPSGFEWQKIVDDWTDWNKWINNIGGIGVPAEKSWESWWEEEQEHLRYSGKRGIVVEILLALRFFIYQYGL 1760
WD40-rpts      _______________________________________)                                        

Query     1761 VYHLTITEKTKNFLVYGVSWLVIFLIFFLLFGLIFMTFIAIIVILITLAHMTIQDIIVCILAFMPTGWGMLLIAQACKPV 1840
WD40-rpts                                                                                      

Query     1841 VHRAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHRKDRSSRNKE 1914
WD40-rpts                                                                                

1 WD40-repeats found in QUERY=AT5G13000.2 (Len=1914):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 17  1619-1720     3.10  242.75  0.03283       30.0%     11.57

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1619-1720   TGRGFVVFHAKFADNYRLYSRSHFVKGLEMMLLLVVYQIFGSAYRGVLAYLLITISMWFMVGTWLFAPFLFNPSGFEWQKIVDDWTDWNKWINNIGGIGVPA

   WD40 Template    TGECLRTLSGH---------TS-----------------------GV-------------------TSVSFSPDGKRLVSGSED-----------GTIKVWD