Input parameters:

  Query = AT5G12920.2 (Len=572)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G12920.2, Len=572):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRSHKDTPAPTLSYQVVSSPLKAVETGHKVRMDLIKKSKLRYQWRHRRLQFCYLRRVRDLKLGSQGSEDTVRPWKRSLIE 80  
WD40-rpts                                                                                      

Query       81 VNGRLDSAYRHELYSRVAHSYSEIGKFSHFYHLNENPCITHMMQIQSLYQCPTMRGVAGLDFDNRVRSLINTFGLVSVHV 160 
WD40-rpts                             (_____________________WD 1____________________)   (______

Query      161 QCYFIISDLCLRDSSHQGIFLVSVTRSGCLMVHDFESLYCQSKLGPGSAEDESKHVVHFSYPPGREFDVARWNPSNQNEV 240 
WD40-rpts      ____________WD 2_________________)       (________________________WD 3__________

Query      241 ACTSRKHDQVLIFDISYMSPKPTEVLQTRQKLSIIGRKISRGLSDVAITSDEDSRIFSPDTLGMVHVWDRRAGVSPCIEL 320 
WD40-rpts      _____________)               (_________________WD 4_________________)     (_____

Query      321 STDRYDSIKSIQIYVDNQTIFGAGKEGIIHIWDLRGGRNSSAFQSRKDVSLTRGELELAMAMSQLPLASLHLAPKLQKIA 400 
WD40-rpts      ____________WD 5________________)                                               

Query      401 SLKAQSEIVPKEIHSIDVNPSSPHQLAFHLDDGWSGVLDIYKSEVTHVHCPPPAWLDGSNSSADLILRKPSWLPTSSIYV 480 
WD40-rpts             (_____________WD 6_____________)                                    (____

Query      481 VGSMSEKGIHVLDFHPSSRSPCHVDYDEDTQRNEKRDKCNHRNKFVSLSETVTGCAAHPLNGMIVAGTQNSSLLLIAQMH 560 
WD40-rpts      _____________WD 7________________)(___________________WD 8__________________)   

Query      561 CSSSSETAEGEL 572 
WD40-rpts                  

8 WD40-repeats found in QUERY=AT5G12920.2 (Len=572):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   104-150      6.37  377.77  0.00050       12.5%     19.05
  WD 2:  Seg  7   154-194      6.32  375.88  0.00053       25.0%     32.56
  WD 3:  Seg 11   202-254      3.21  247.10  0.02874        5.0%     48.84
  WD 4:  Seg 15   270-309      6.41  379.37  0.00048       20.0%     52.01
  WD 5:  Seg 19   315-353      8.75  476.31  2.4e-05       17.5%     49.86
  WD 6:  Seg 23   408-439      4.09  283.64  0.00933       17.5%     35.84
  WD 7:  Seg 27   476-514      6.85  397.72  0.00027       12.5%     32.64
  WD 8:  Seg 30   515-557      3.34  252.68  0.02422       12.5%     41.41

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  104-150    IG-----------K---FSHFYHLNENPCITH--MMQIQSLYQCP-TMRG--VAGLDFDNRVRSLI
   WD 2  154-194    -G-----------L---VSV-------HVQCYFIISDLCLRDSSH-QGIF--LVSVTRSGCLMVHD
   WD 3  202-254    SKLGPGSAEDESKH---VVH-------FSYPP--GREFDVARWNP-SNQNEVACTSRKHDQVLIFD
   WD 4  270-309    -Q-----------K---LSI-------IGRKI--SRGLSDVAITSDEDSR--IFSPDTLGMVHVWD
   WD 5  315-353    -S-----------P---CIE-------LSTDR--YDSIKSIQIYV-DNQT--IFGAGKEGIIHIWD
   WD 6  408-439    ------------------------------IV--PKEIHSIDVNPSSPHQ--LAFHLDDGWSGVLD
   WD 7  476-514    -S-----------S---IYV-------VGSMS--EKGIHVLDFHP-SSRS--PCHVDYDEDTQRNE
   WD 8  515-557    KR-----------DKCNHRN-------KFVSL--SETVTGCAAHP-LNGM--IVAGTQNSSLLLIA

   WD40 Template    TG-----------E---CLR-------TLSGH--TSGVTSVSFSP-DGKR--LVSGSEDGTIKVWD