Input parameters:

  Query = AT5G12920.1 (Len=537)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G12920.1, Len=537):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRSHKDTPAPTLSYQVVSSPLKAVETGHKVRMDLIKKSKLRYHRGQKSMEKYLVSPEPSPAKSRTTVRRPWKRSLIEVNG 80  
WD40-rpts                                                                                      

Query       81 RLDSAYRHELYSRVAHSYSEIGKFSHFYHLNENPCITHMMQIQSLYQCPTMRGVAGLDFDNRGIFLVSVTRSGCLMVHDF 160 
WD40-rpts                          (___________________________WD 1__________________________) 

Query      161 ESLYCQSKLGPGSAEDESKHVVHFSYPPGREFDVARWNPSNQNEVACTSRKHDQVLIFDISYMSPKPTEVLQTRQKLSII 240 
WD40-rpts                                                                               (______

Query      241 GRKISRGLSDVAITSDEDSRIFSPDTLGMVHVWDRRAGVSPCIELSTDRYDSIKSIQIYVDNQTIFGAGKEGIIHIWDLR 320 
WD40-rpts      ____________WD 2_________________)     (_________________WD 3________________)  

Query      321 GGRNSSAFQSRKDVSLTRGELELAMAMSQLPLASLHLAPKLQKIASLKAQSEIVPKEIHSIDVNPSSPHQLAFHLDDGWS 400 
WD40-rpts       (_________________WD 4________________)    (_________________WD 5______________

Query      401 GVLDIYKSEVTHVHCPPPAWLDGSNSSADLILRKPSWLPTSSIYVVGSMSEKGIHVLDFHPSSRSPCHVDYDEDTQRNEK 480 
WD40-rpts      ___)                                    (_________________WD 6________________)(

Query      481 RDKCNHRNKFVSLSETVTGCAAHPLNGMIVAGTQNSSLLLIAQMHCSSSSETAEGEL 537 
WD40-rpts      ___________________WD 7__________________)               

7 WD40-repeats found in QUERY=AT5G12920.1 (Len=537):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   101-159      6.97  402.45  0.00023       27.5%     45.77
  WD 2:  Seg 13   234-274      8.76  476.54  2.3e-05       20.0%     51.42
  WD 3:  Seg 17   280-318      8.51  466.07  3.3e-05       17.5%     52.25
  WD 4:  Seg 21   322-360      4.81  313.22  0.00374        2.5%     12.77
  WD 5:  Seg 23   365-404      5.85  356.19  0.00099       17.5%     41.17
  WD 6:  Seg 27   441-479      7.39  420.07  0.00014       12.5%     34.98
  WD 7:  Seg 30   480-522      5.75  352.33  0.00111       12.5%     40.56

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  101-159    IGK---FSHFYHLNENPCITHMMQIQSLYQCPTMRGVAGLDFDN-RGIFLVSVTRSGCLMVHD
   WD 2  234-274    RQK---LSII-------------------GRKISRGLSDVAITSDEDSRIFSPDTLGMVHVWD
   WD 3  280-318    -SP---CIEL-------------------STDRYDSIKSIQIYV-DNQTIFGAGKEGIIHIWD
   WD 4  322-360    -GR---NSSA-------------------FQSRKDVSLTRGELE-LAMAMSQLPLASLHLAPK
   WD 5  365-404    -AS---LKAQ-------------------SEIVPKEIHSIDVNPSSPHQLAFHLDDGWSGVLD
   WD 6  441-479    -SS---IYVV-------------------GSMSEKGIHVLDFHP-SSRSPCHVDYDEDTQRNE
   WD 7  480-522    KRDKCNHRNK-------------------FVSLSETVTGCAAHP-LNGMIVAGTQNSSLLLIA

   WD40 Template    TGE---CLRT-------------------LSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD