Input parameters:

  Query = AT5G12200.1 (Len=531)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G12200.1, Len=531):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MALDAFFFIVSLFLLFPSPSASESTTQFCSAGRENGVGSCGVSSTRILIKGGTVVNAHHQELADVYVENGIIVAVQPNIK 80  
WD40-rpts                                                                                      

Query       81 VGDEVTVLDATGKFVMPGGIDPHTHLAMEFMGTETIDDFFSGQAAALAGGTTMHIDFVIPVNGNLVAGFEAYENKSRESC 160 
WD40-rpts                                                                                      

Query      161 MDYGFHMAITKWDEGVSRDMEMLVKEKGINSFKFFLAYKGSLMVTDDLLLEGLKRCKSLGALAMVHAENGDAVFEGQKRM 240 
WD40-rpts                                                                                      

Query      241 IELGITGPEGHALSRPPVLEGEATARAIRLARFINTPLYVVHVMSVDAMDEIAKARKSGQKVIGEPVVSGLILDDHWLWD 320 
WD40-rpts                                                                                      

Query      321 PDFTIASKYVMSPPIRPVGHGKALQDALSTGILQLVGTDHCTFNSTQKALGLDDFRRIPNGVNGLEERMHLIWDTMVESG 400 
WD40-rpts                                   (___________________________________________WD 1___

Query      401 QLSATDYVRITSTECARIFNIYPRKGAILAGSDADIIILNPNSSYEISSKSHHSRSDTNVYEGRRGKGKVEVTIAGGRIV 480 
WD40-rpts      _______________________________________)                                        

Query      481 WENEELKVVPRSGKYIEMPPFSYLFDGIEKSDANYLSSLRAPVKRVRTEAT 531 
WD40-rpts                                                         

1 WD40-repeats found in QUERY=AT5G12200.1 (Len=531):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   350-440      3.68  266.55  0.01582       20.0%      9.69

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  350-440    TGILQLVGTDHCTFNSTQKALGLDDFRRIPNGVNGLEERMHLIWDTMVESGQLSATDYVRITSTECARIFNIYPRKGAILAGSDADIIILN

   WD40 Template    TGECLRTLSGHTSGV--------TSVSFSPDGKR-----------------LVS--------------------------GSEDGTIKVWD