Input parameters:

  Query = AT5G11240.1 (Len=615)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G11240.1, Len=615):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASTEETNIYTKVGKGHLSVDYTCMKWLSLEKKKK 80  
WD40-rpts      (______________WD 1_____________)   (________________WD 2_______________)       

Query       81 RKLGTSVLVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSAKASCIYSGGADGMVCQIDPHSGNLIRKFKASTKT 160 
WD40-rpts                           (___________________WD 3__________________)   (____________

Query      161 VSSLCVSPDGKILVTASTQLKTFNCSDLKKIQKFTGHPGVVRCVAFTEDGKYVLSSAVGERYIAVWKTDGAKKQSASCVL 240 
WD40-rpts      ____WD 4_______________)   (_________________WD 5_________________)        (____

Query      241 ALEHPPVFVDSWGETNEKGLYVLAISEIGVCYFWYGSNVEELCNATPTKVALATADSSLKPYKSSLPLIFAAKLQGILKP 320 
WD40-rpts      _____________WD 6_________________)                            (________________

Query      321 GSAHAFIASGLLVKPSFQKMVLQFGNDLVLNASKDGILLPITQSVSKSSKRQGVQNKVTTLDRAHAEDALLPIARVADLH 400 
WD40-rpts      __WD 7__________________)(_________________WD 8_________________)               

Query      401 EKKSVQLHSSDKDTYMVDQSHADHVETFSMEDKLRSLGILGGTDEHKNLSYASIIDGTDLKAYLPPKKLKSAVLSMEPST 480 
WD40-rpts                                                                                      

Query      481 AFKTLEALAAMWQTRACGGRHLLPWIYSIMVNHSHYIMSQEPKNQQLLNTLVKITKSRGTALQQLLQLSGRLQLVTAQIN 560 
WD40-rpts                                                                                      

Query      561 KAAGSQTQITAHDQEIDESEDEEEDVEDHFYGENDNESDLSSDDGKDKDDSLMET 615 
WD40-rpts                                                             

8 WD40-repeats found in QUERY=AT5G11240.1 (Len=615):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-33       6.26  373.40  0.00058       30.0%     41.30
  WD 2:  Seg  5    37-73       5.90  358.21  0.00093       20.0%     50.25
  WD 3:  Seg 12   102-144      8.05  447.34  5.8e-05       30.0%     50.65
  WD 4:  Seg 16   148-184      7.60  428.52  0.00010       35.0%     49.60
  WD 5:  Seg 20   188-227      7.78  435.92  8.3e-05       32.5%     55.90
  WD 6:  Seg 24   236-275      6.18  370.07  0.00064       22.5%     49.41
  WD 7:  Seg 31   304-345      4.33  293.54  0.00687       17.5%     21.47
  WD 8:  Seg 35   346-385      5.55  343.79  0.00145       15.0%     19.48

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-33     -----------MNLVNIKDVL---TSFSPALDY-LALSTGDGRIKIWD
   WD 2   37-73     -G---Q---VQTEFADIASTEET-NIYTKVGK---GHLSVDYTCMKWL
   WD 3  102-144    VA---SGQLKWRISDCHPGGVNA-VSSSAKASC-IYSGGADGMVCQID
   WD 4  148-184    -G---N---LIRKFKASTKTVSS-LCVSPDGKI-LVTASTQ--LKTFN
   WD 5  188-227    -L---K---KIQKFTGHPGVVRC-VAFTEDGKYVLSSAVGERYIAVWK
   WD 6  236-275    -A---S---CVLALEHPPVFVDSWGETNEKGLY-VLAISEIGVCYFWY
   WD 7  304-345    SSLPLI---FAAKLQGILKPGSA-HAFIASGL--LVKPSFQKMVLQFG
   WD 8  346-385    ND---L---VLNASKDGILLPIT-QSVSKSSKR-QGVQNKVTTLDRAH

   WD40 Template    TG---E---CLRTLSGHTSGVTS-VSFSPDGKR-LVSGSEDGTIKVWD