Input parameters:

  Query = AT5G10940.2 (Len=754)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G10940.2, Len=754):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDNLSFHDGNIFNLLHTRSQDPSHEVDQRMQFHSSLVRRLSQEQELEGHQGCVNALAWNSNGSLLISGSDDLRINIWNYS 80  
WD40-rpts      (______________WD 1______________)     (_________________WD 2________________)(_

Query       81 SRKLLHSIDTGHTANIFCTKFVPETSDELVVSGAGDAEVRLFNTSRLSGRAEDDNAIIPSALYQCHTRRVKKLAVEPGNP 160 
WD40-rpts      ___________________WD 3___________________)             (_________________WD 4__

Query      161 NVVWSASEDGTLRQHDFRESTSCPPAGTAHQECRSVLLDLRSGAKRALADPPKQTLSLKSCDISATRPHLLLVGGSDAFA 240 
WD40-rpts      _______________)                            (_________________WD 5______________

Query      241 RLYDRRMLPPLASSRKRMPPPPCVNYFCPMHLSERGRTNLHLTHVTFSPNGEEVLLSYSGEHVYLMNVNNGTGIMQYTPG 320 
WD40-rpts      ___)                        (_________________WD 6________________)(____________

Query      321 DVDNLFSFSNNLHDVESPPQVSTTPQNGFHRSSNAATVKKCTELVEIAKWSLEEGTDVFYAIEAANEVLDAHSNDIESAL 400 
WD40-rpts      _______WD 7__________________)                                                  

Query      401 RHECLCTRAALLLKRKWKNDAHMAVRDCHNARRIDASSFKAHYYMSEALQQLGKCKEALDFATAAQHMNPSDADIVAKVE 480 
WD40-rpts                                                                                      

Query      481 SIKRDLQAAGAEKNEETGAGTTRVLSLSDILYRSEANSDSSHDMSRSEREDSDYDEELELDIQTSLSDDEGRDTDSNSMR 560 
WD40-rpts                                             (_________________WD 8________________)  

Query      561 GSLNLRIHRVGDDKPMENTVDNASSGTASSSQNDRTSYQPEGAIDMKRRYVGHCNVGTDIKQASFLGQRGEYIASGSDDG 640 
WD40-rpts                                                 (___________________WD 9_____________

Query      641 RWFIWEKQTGRLMKVLVGDESVLNCIQCHPFDSVVATSGIDNTIKIWSPTASVPSIVAGGSAGPATANVVEVMESNQQKL 720 
WD40-rpts      _____)   (_________________WD10________________)   (__________________WD11______

Query      721 SRNRENPLSVELMQRFRMQEFAEGNFHPFECTQS 754 
WD40-rpts      ___________)                      

11 WD40-repeats found in QUERY=AT5G10940.2 (Len=754):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-34       5.36  335.95  0.00185       12.5%     22.69
  WD 2:  Seg  3    40-78       8.91  482.51  2.0e-05       30.0%     55.38
  WD 3:  Seg  7    79-123      6.72  392.05  0.00032       22.5%     51.94
  WD 4:  Seg 11   137-176      6.56  385.64  0.00040       30.0%     49.66
  WD 5:  Seg 16   205-244      5.95  360.27  0.00087       20.0%     42.36
  WD 6:  Seg 20   269-307      5.43  339.13  0.00167       17.5%     43.43
  WD 7:  Seg 23   308-350      4.38  295.48  0.00647        7.5%     10.76
  WD 8:  Seg 35   520-558      4.27  291.06  0.00742       10.0%     -4.12
  WD 9:  Seg 38   604-646      7.47  423.21  0.00012       27.5%     52.08
  WD10:  Seg 42   650-688      8.85  480.31  2.1e-05       25.0%     55.97
  WD11:  Seg 46   692-732      5.54  343.51  0.00146       12.5%     40.44

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-34     -------MDNLSFHDGNIFN--LL----HTR-S--Q--DP-SHEVDQRMQFHS
   WD 2   40-78     -LS---QEQELEGHQGCVNA--LA----WNS-N--GSLLI-SGSDDLRINIWN
   WD 3   79-123    YSSRKLLHSIDTGHTANIFC--TK----FVP-ETSDELVV-SGAGDAEVRLFN
   WD 4  137-176    -II---PSALYQCHTRRVKK--LA----VEP-G--NPNVVWSASEDGTLRQHD
   WD 5  205-244    -KR---ALADPPKQTLSLKS--CD----ISATR--PHLLL-VGGSDAFARLYD
   WD 6  269-307    -PM---HLSERGRTNLHLTH--VT----FSP-N--GEEVL-LSYSGEHVYLMN
   WD 7  308-350    VNNGTGIMQYTPGDVDNLFS--FS----NNL-H--DVESP-PQVSTTPQNGFH
   WD 8  520-558    -SS---HDMSRSEREDSDYD--EE----LEL-D--IQTSL-SDDEGRDTDSNS
   WD 9  604-646    -ID---MKRRYVGHCNVGTD--IKQASFLGQ-R--GEYIA-SGSDDGRWFIWE
   WD10  650-688    -GR---LMKVLVGDESVLNC--IQ----CHP-F--DSVVA-TSGIDNTIKIWS
   WD11  692-732    -SV---PSIVAGGSAGPATANVVE----VME-S--NQQKL-SRNRENPLSVEL

   WD40 Template    TGE---CLRTLSGHTSGVTS--VS----FSP-D--GKRLV-SGSEDGTIKVWD