Input parameters:

  Query = AT5G10140.4 (Len=182)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G10140.4, Len=182):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQHADDLKA 80  
WD40-rpts      (______________________________________WD 1_____________________________________

Query       81 LDHQSKALNYGSHYELLELVDSKLVGSNVKNVSIDALVQLEEHLETALSVTRAKKTELMLKLVENLKEKMENNHHVGAEA 160 
WD40-rpts      _)                                                                              

Query      161 EMEMSPAGQISDNLPVTLPLLN 182 
WD40-rpts                            

1 WD40-repeats found in QUERY=AT5G10140.4 (Len=182):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-82       2.92  235.43  0.04104       25.0%     20.73

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-82     MGRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQHADDLKALD

   WD40 Template    TGECLR-------------TL----SG-----------HTSGVTSVSFSPDGKRLVSGSEDG----------TIKV----WD