Input parameters:

  Query = AT5G09590.1 (Len=682)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G09590.1, Len=682):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATAALLRSIRRREVVSSPFSAYRCLSSSGKASLNSSYLGQNFRSFSRAFSSKPAGNDVIGIDLGTTNSCVAVMEGKNPK 80  
WD40-rpts                                                                                      

Query       81 VIENAEGARTTPSVVAFNTKGELLVGTPAKRQAVTNPTNTVSGTKRLIGRKFDDPQTQKEMKMVPYKIVRAPNGDAWVEA 160 
WD40-rpts                                                                                      

Query      161 NGQQYSPSQIGAFILTKMKETAEAYLGKSVTKAVVTVPAYFNDAQRQATKDAGRIAGLDVERIINEPTAAALSYGMTNKE 240 
WD40-rpts                               (____________________________WD 1______________________

Query      241 GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKTTEGIDLAKDRLALQRLREAAEKAKI 320 
WD40-rpts      ______)                                                                         

Query      321 ELSSTSQTEINLPFITADASGAKHFNITLTRSRFETLVNHLIERTRDPCKNCLKDAGISAKEVDEVLLVGGMTRVPKVQS 400 
WD40-rpts                                                                                      

Query      401 IVAEIFGKSPSKGVNPDEAVAMGAALQGGILRGDVKELLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQVFSTAAD 480 
WD40-rpts                                                                                      

Query      481 NQTQVGIRVLQGEREMATDNKLLGEFDLVGIPPSPRGVPQIEVTFDIDANGIVTVSAKDKTTGKVQQITIRSSGGLSEDD 560 
WD40-rpts                                                                                      

Query      561 IQKMVREAELHAQKDKERKELIDTKNTADTTIYSIEKSLGEYREKIPSEIAKEIEDAVADLRSASSGDDLNEIKAKIEAA 640 
WD40-rpts                                                                                      

Query      641 NKAVSKIGEHMSGGSGGGSAPGGGSEGGSDQAPEAEYEEVKK 682 
WD40-rpts                                                

1 WD40-repeats found in QUERY=AT5G09590.1 (Len=682):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   186-247      2.83  231.40  0.04638       17.5%     13.43

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  186-247    LGKSVTKAVVTVPAYFNDAQRQATKDAGRIAGLDVERIINEPTAAALSYGMTNKEGLIAVFD

   WD40 Template    TGECLRTLSGHTSGVTS-----------VSFSPDGKRLVSG-----------SEDGTIKVWD