Accession: AT5G08560.2 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = AT5G08560.2 (Len=589)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G08560.2, Len=589):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGVVEDTEPPLKRAKRLADEPNGFSANSSVRGSSVNSNSLGDLMARPLPSQGDDETIGSKGVIRKSEFVRIITRALYSLG 80  
WD40-rpts                                                                                      

Query       81 YDKTGAMLEEESGISLHNSTIKLFLQQVKDGKWDQSVKTLHRIGFPDEKAVKAASFLLLEQKFLEFLKVEKIADALRTLR 160 
WD40-rpts                                                                                      

Query      161 NEMAPLRINTKRVHELASSLISPSSFISHTTSTPGKESVNSRSKVLEELQTLLPASVIIPEKRLECLVENSLHIQRDSCV 240 
WD40-rpts                                                                                      

Query      241 FHNTLDSDLSLYSDHQCGKHQIPSQTAQILESHTDEVWFLQFSHNGKYLASSSKDQTAIIWEISADGHISLKHTLVGHHK 320 
WD40-rpts                                 (_______________WD 1______________)(_________________

Query      321 PVIAILWSPDDRQVLTCGAEEVIRRWDVDSGDCVHMYEKGGISPISCGWYPDGQGIIAGMTDRSICMWDLDGREKECWKG 400 
WD40-rpts      ___WD 2___________________)   (_________________WD 3________________)   (_______

Query      401 QRTQKVSDIAMTDDGKWLVSVCKDSVISLFDREATVERLIEEEDMITSFSLSNDNKYILVNLLNQEIRLWNIEGDPKIVS 480 
WD40-rpts      __________WD 4________________)     (_______________WD 5______________)    (____

Query      481 RYKGHKRSRFIIRSCFGGYKQAFIASGSEDSQVYIWHRSTGKLIVELPGHAGAVNCVSWSPTNLHMLASASDDGTIRIWG 560 
WD40-rpts      ______________WD 6__________________)   (_________________WD 7_________________)

Query      561 LDRINQQNQKKKLVQGSSSNGVIHRCNGN 589 
WD40-rpts

7 WD40-repeats found in QUERY=AT5G08560.2 (Len=589):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   268-302      8.72  474.98  2.5e-05       35.0%     49.95
  WD 2:  Seg  8   303-347      8.88  481.58  2.0e-05       27.5%     58.46
  WD 3:  Seg 12   351-389      9.22  495.69  1.3e-05       27.5%     54.51
  WD 4:  Seg 16   393-431      8.47  464.40  3.4e-05       30.0%     59.25
  WD 5:  Seg 20   437-471      7.04  405.43  0.00021       22.5%     49.48
  WD 6:  Seg 23   476-517      6.70  391.26  0.00033       22.5%     57.26
  WD 7:  Seg 27   521-560      8.97  485.24  1.8e-05       42.5%     56.58

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  268-302    ----------QILESHTDE---VWFLQFSHNG-KYLASSSKDQTAIIWE
   WD 2  303-347    ISADGHISLKHTLVGHHKP---VIAILWSPDD-RQVLTCGAEEVIRRWD
   WD 3  351-389    -G-----DCVHMYEKGGIS---PISCGWYPDG-QGIIAGMTDRSICMWD
   WD 4  393-431    -R-----EKECWKGQRTQK---VSDIAMTDDG-KWLVSVCKDSVISLFD
   WD 5  437-471    ----------ERLIEEEDM---ITSFSLSNDN-KYILVNLLNQEIRLWN
   WD 6  476-517    -P-----KIVSRYKGHKRSRFIIRSCFGGYKQ-AFIASGSEDSQVYIWH
   WD 7  521-560    -G-----KLIVELPGHAGA---VNCVSWSPTNLHMLASASDDGTIRIWG

   WD40 Template    TG-----ECLRTLSGHTSG---VTSVSFSPDG-KRLVSGSEDGTIKVWD