Input parameters:

  Query = AT5G08110.1 (Len=1141)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G08110.1, Len=1141):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MENERRSGGGDSVPISVRSINGESTTVQVSSDGTIRDLKKALKSCFPPASSSSNFHLYIKGEKLKLDTRVAAITINDGDI 80  
WD40-rpts                                                                                      

Query       81 LGLFPFKKKELRQTPKPDLSKPSSLSSRTSTMKDENAKRAEDHCVGEKRKRDEEACPYGFFNDDLESECKDAFKGQNTEK 160 
WD40-rpts                                                                                      

Query      161 LAEVLKSRNCLTSPGSTKCLMSWDSSSSLCSCPDWESLSRLAMSGVRVRIQDVKNLSVICPKVITDDYEAVNYENAIVIA 240 
WD40-rpts                                                                                      

Query      241 DYLEMDEKSGRKKIPLAKLFSAMKKREASFKSDFWESIRSLLNKNTGESGIAISLEGLLKFASEGRADGGNEARQAGKGT 320 
WD40-rpts                                                                                      

Query      321 CPTSGSRKFQTLCHATNSLLPSEMVEHLRNGIGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAE 400 
WD40-rpts                                                                                      

Query      401 AISAALAGKNVAVATMTSSGKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPY 480 
WD40-rpts            (_________________________________________WD 1____________________________

Query      481 KDRTRLRSNARLLITNPDMLHISILRRHKEQFSRILSNLRYIVIDEAHIYKGPFGCHMALILRRLRRLCSHVYGVNPSFI 560 
WD40-rpts      _____________)                                                                  

Query      561 FCTATSANPREHCMELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVSSSEAAADKPSGAAVDTLSGPAS 640 
WD40-rpts                                                                                      

Query      641 EVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIAATNA 720 
WD40-rpts                                                                                      

Query      721 LELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRQKPSLAVYVAFLGPLDQYYMSFPDKLFGSPIECCHIDSQNKHVLM 800 
WD40-rpts                                                                                      

Query      801 QHLACAALEHPLSLQYDQQHFGSGLSDPLAELRNKGFLSFDPSRDSSSRIWNYIGREKNPARIVSIRAIETVRYRVMEKK 880 
WD40-rpts                                                                                      

Query      881 SKDVLDEIEESKAFFHVYEGAIYMNQGRNYLVTSLDIKEKVALCELVNVDYYTRTRDYTDIKVTGGDTAYPVKAPKKPTP 960 
WD40-rpts                                                                                      

Query      961 QTHACRVTTKWFGFLRIRRRNNEVIDDVELSLPSYTYQSQAVWIQVPMSVKLAVETANLPFRAGLHAACHALVNVVPTRV 1040
WD40-rpts                                                                                      

Query     1041 TCNYSDIAPECPNPQEQRYFPARILVYDRHPGGTGISAKICPLFFELLKDARDLLRSCEKCPPETGCPKCAQTFGCRGYN 1120
WD40-rpts                                                                                      

Query     1121 ELLHKKAAIMIMQGVLDAKED 1141
WD40-rpts                           

1 WD40-repeats found in QUERY=AT5G08110.1 (Len=1141):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   407-494      2.90  234.30  0.04246       17.5%     37.70

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  407-494    AGKNVAVATMTSSGKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSNARLLI

   WD40 Template    TGECLRTLSGHTSG------------------VTSVSFSPD------------------GKRLVSGSEDGTIK------------VWD