Input parameters:

  Query = AT5G05970.1 (Len=781)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G05970.1, Len=781):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMSNLVEPSWRLLAASGGDTVKLFDVSADSGDPCVLSYTPSPGCAVNSVKWNHTNLVVASTGEDKKISLWRKNGQSLGTV 80  
WD40-rpts                               (____________________WD 1____________________)         

Query       81 PVTGKDGGDSAEECLSAISFSKKGSRYICSGGTGQIVKIWDLQRKLCIKKLKGHTSTITGVMYNCKDEHLASVSVGGDLI 160 
WD40-rpts       (_________________WD 2_________________)   (_________________WD 3______________

Query      161 VHNLASGARATELKDPNGQVLRLLDYSRSSRHLLVTAGDDGTVHLWDTTGRSPKMSWLKQHSAPTAGVCFSPSNEKIIAS 240 
WD40-rpts      __)   (__________________WD 4_________________)    (_________________WD 5_______

Query      241 VGMDKKLYTYDSGSRRSSSCIAYEAPFSSLAFGDNGYILVAGTSNGRVVFYDIRGKPQPVTVLHAFSNSEDVTSLSWQTS 320 
WD40-rpts      __________)(__________________WD 6_________________)      (_________________WD 7

Query      321 KPVIVNEKNYTSEMALLGSTVEDSVVIPDPLPSTTPSASQSAMAPGSRGVSASTVNASSVEQTPNRNHLWPSGPLGRLHA 400 
WD40-rpts      ________________)(____________________WD 8____________________)                 

Query      401 LRANDSYNDDMGVFSPIIDVSSVEKWADSEGYNNKDHLVVDNKPSSLLFPSSSKGYSFGDNGSKEHPIFDWKPSSTSKQD 480 
WD40-rpts                                    (__________________WD 9__________________)        

Query      481 DPRAAFSSFGSITPTASSKSEDSALTPPEAWGGDKFSEKFNQLANEKFSDKFSHLHAPSRLAVSSTGASTSGSMFSSSRD 560 
WD40-rpts                                                                                      

Query      561 FPLSHGQTNFANASLEFPRIRDFSSTFETSSTQTDNNLPSSPLFTKGITAPGNIDSLRLSPNFTRRFSTYAERISTTSSF 640 
WD40-rpts                                                                                      

Query      641 SDGASLSLGGSPKIKKTGSETREEVLNHLLARPETVVATEAGAMPLMNGGLKQSQTDQQQVMGSSNFTLQLFQRTLEGTL 720 
WD40-rpts                                                                                      

Query      721 DSFQNSIHDDVRNLHIEILRQFHMHEMEMSKVLSSILENQAEQMKELKLLRKENQELRQRL 781 
WD40-rpts                                                                   

9 WD40-repeats found in QUERY=AT5G05970.1 (Len=781):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    26-71       7.52  425.16  0.00012       22.5%     55.34
  WD 2:  Seg  9    82-121      7.34  417.88  0.00015       25.0%     39.24
  WD 3:  Seg 12   125-163      9.33  500.26  1.1e-05       32.5%     58.71
  WD 4:  Seg 16   167-207      6.69  390.90  0.00034       27.5%     51.66
  WD 5:  Seg 20   212-251      7.47  423.34  0.00012       25.0%     54.49
  WD 6:  Seg 24   252-292      8.24  455.15  4.6e-05       22.5%     56.54
  WD 7:  Seg 28   299-337      5.21  329.98  0.00222       12.5%     48.88
  WD 8:  Seg 32   338-383      3.33  252.35  0.02447        7.5%     -0.50
  WD 9:  Seg 37   431-472      4.45  298.36  0.00592       20.0%     -0.04

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   26-71     VSADSGDPCVLSYTPSPGCAV-NSVKWNHTN-LV-VA---STGEDKKISLWR
   WD 2   82-121    -VT------GKDGGDSAEECL-SAISFSKKG-SRYIC---SGGTGQIVKIWD
   WD 3  125-163    -KL------CIKKLKGHTSTI-TGVMYNCKD-EH-LA---SVSVGGDLIVHN
   WD 4  167-207    -GA------RATELKDPNGQVLRLLDYSRSS-RHLLV---TAGDDGTVHLWD
   WD 5  212-251    -SP------KMSWLKQHSAPT-AGVCFSPSNEKI-IA---SVGMDKKLYTYD
   WD 6  252-292    SGS-----RRSSSCIAYEAPF-SSLAFGDNG-YI-LV---AGTSNGRVVFYD
   WD 7  299-337    -PV------TVLHAFSNSEDV-TSLSWQTSK-PV-IV---NEKNYTSEMALL
   WD 8  338-383    GSTVEDSVVIPDPLPSTTPSA-SQSAMAPGS-RG-VS---ASTVNASSVEQT
   WD 9  431-472    -GY------NNKDHLVVDNKP-SSLLFPSSS-KG-YSFGDNGSKEHPIFDWK

   WD40 Template    TGE------CLRTLSGHTSGV-TSVSFSPDG-KR-LV---SGSEDGTIKVWD