Input parameters:

  Query = AT5G05570.1 (Len=1124)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G05570.1, Len=1124):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFVRKFLQKSSGGQNPPPPIAPPPRGCLMAEDLDPHIITHSGIPSTASLLAFDPIQCLLAVGTLDGRIKVIGGDNIEAIL 80  
WD40-rpts                                             (______________WD 1_____________)  (_____

Query       81 ASPKQLPFKNLEFMQNQGFLVSISNENEIQVWDLDLRQPASSLKWESNITAFAILHGTGYMYVGDEYGMVSVLNYSADEG 160 
WD40-rpts      ____________WD 2________________)       (______________WD 3______________)      

Query      161 KLLQLPYYVPTDALSEAAGLSSPIDYPVVGLLSQPCSKGTRLLIAFSNGLLFLWDASEDHVVLVRGNKDLPVEGKTVADS 240 
WD40-rpts                     (_________________WD 4_________________)          (______________

Query      241 LEASHDELSNLELDGKEISSLCWASTDGSVLAVGYVDGDILFWDFSDGQKGKPSNHVVKLQLSSAEKRLPVIVMHWCLDV 320 
WD40-rpts      _____________WD 5__________________________)                                    

Query      321 SRKSSGGKLFIYGGDIIGSDEVLTMLGLDWSSGMGGLKCVGRADLTLSGSFADMVLSPIASSRQSGVFLFLLTNPGQLQA 400 
WD40-rpts                                                                    (_________________

Query      401 YDDTSLASLMSQKENKISVSPLPYPMVVPTMDPHMTVATFSALNVNDKTSLALSEIVLAAKARTPRTPSGESAQWPLTGG 480 
WD40-rpts      WD 6________________)                                       (___________________

Query      481 VPSHVDDYKLERLYMAGYQDGSMRIWDATYPCLSLIYILEPKASVIDITGVDASVTAFCFCSKTSCLAVGNECGMVRLYK 560 
WD40-rpts      __WD 7____________________)            (__________________WD 8_________________)

Query      561 LVGHTSGGTLEVVTNTEKKGLAIVTTLTLWICYALSHAVGSLLVAHHLHQEDGPQWLAAFSFLSSPVCTLQFVQSTRRLA 640 
WD40-rpts                                                           (_________________WD 9_____

Query      641 VGFKCGKVAVLDIGVPSVLFVTNSLSDSGSPIKSLYVKSSSAPTGSKSDPTDHNSINSEDDLLLCAMTKDGQTILLDGNT 720 
WD40-rpts      ___________)                          (_________________WD10________________)   

Query      721 GKILASCLRPLKNPTAICMHIIENCYENYETPSEKPAENPSGKDKHENKSHIIKASESHSPDGEQNAVTETKLIDQIFAN 800 
WD40-rpts      (_________________WD11________________)                                         

Query      801 SLFLMCSEDALRLYTVKSLSQGSLESIMEVNLPRPCCWMGILKKDGRECAVLLFYRTGHIEIRSFPNLEVVGESSLLSLL 880 
WD40-rpts                                                                                      

Query      881 RWNFKPNMEKTVCSDDFGHVVLVNGCEVAILSFLAHANGFRLPESLPLLHDKVLAAAADATFSHISVHKKNHDGAPKFLS 960 
WD40-rpts                                                                                      

Query      961 NIIKGFRSSTEQKMDQVQDFSHLGNIFSNPPYLKPSDTGGDDEKIVELNIDDIEIDEPVIILPLTEKDKKEKKDKRTDKE 1040
WD40-rpts                                                                                      

Query     1041 KLFDGASSDAQPKTRTVDEIKSKYRKAGETSAIASQAKDKLHERGEKLERISQRTAELQDNAENFASMAHELAKQMEKRK 1120
WD40-rpts                                                                                      

Query     1121 WWNI 1124
WD40-rpts          

11 WD40-repeats found in QUERY=AT5G05570.1 (Len=1124):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    40-72       5.00  321.08  0.00293       30.0%     42.70
  WD 2:  Seg  5    75-113      5.71  350.71  0.00117       25.0%     56.61
  WD 3:  Seg  9   121-154      3.82  272.60  0.01312       15.0%     48.69
  WD 4:  Seg 13   176-215      3.95  277.82  0.01117       17.5%     29.18
  WD 5:  Seg 17   226-284      4.82  313.78  0.00367       32.5%     44.65
  WD 6:  Seg 26   383-421      3.41  255.64  0.02212       10.0%     18.45
  WD 7:  Seg 30   461-507      5.29  333.36  0.00200       25.0%     19.91
  WD 8:  Seg 33   520-560      6.11  366.91  0.00071       20.0%     52.27
  WD 9:  Seg 39   614-652      5.61  346.23  0.00134       27.5%     54.24
  WD10:  Seg 45   679-717      4.08  283.14  0.00948       20.0%     21.21
  WD11:  Seg 47   721-759      3.71  267.87  0.01518        7.5%      7.46

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   40-72     --------------------------HSGIP-------STASLLAF-DPIQCLLAVGTLDGRIKVIG
   WD 2   75-113    -N------------------IE-AILASPKQ-------LPFKNLEF-MQNQGFLVSISNENEIQVWD
   WD 3  121-154    -------------------------SSLKWE-------SNITAFAI-LHGTGYMYVGDEYGMVSVLN
   WD 4  176-215    EA------------------AG-LSSPIDYP-------VVGLLSQP-CSKGTRLLIAFSNGLLFLWD
   WD 5  226-284    GNKDLPVEGKTVADSLEASHDE-LSNLELDG-------KEISSLCWASTDGSVLAVGYVDGDILFWD
   WD 6  383-421    -R------------------QS-GVFLFLLT-------NPGQLQAY-DDTSLASLMSQKENKISVSP
   WD 7  461-507    KA------------------RT-PRTPSGESAQWPLTGGVPSHVDD-YKLERLYMAGYQDGSMRIWD
   WD 8  520-560    EP------------------KASVIDITGVD-------ASVTAFCF-CSKTSCLAVGNECGMVRLYK
   WD 9  614-652    -P------------------QW-LAAFSFLS-------SPVCTLQF-VQSTRRLAVGFKCGKVAVLD
   WD10  679-717    SS------------------SA--PTGSKSD-------PTDHNSIN-SEDDLLLCAMTKDGQTILLD
   WD11  721-759    -G------------------KI-LASCLRPL-------KNPTAICM-HIIENCYENYETPSEKPAEN

   WD40 Template    TG------------------EC-LRTLSGHT-------SGVTSVSF-SPDGKRLVSGSEDGTIKVWD