Input parameters:

  Query = AT5G04800.3 (Len=141)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G04800.3, Len=141):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERER 80  
WD40-rpts      (______________________________________________________WD 1_____________________

Query       81 RMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEPQQAMAPIAAFGGGRAPRRY 141 
WD40-rpts      ________________________________)                            

1 WD40-repeats found in QUERY=AT5G04800.3 (Len=141):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-113      2.95  236.49  0.03974       22.5%     -8.47

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-113    MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSD

   WD40 Template    TGECLR------------------TLS-------------GHT--------------------SGVTSVS-------------FSPDGKRLVSGSEDGT---------IKVWD