Input parameters:

  Query = AT5G02760.1 (Len=370)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G02760.1, Len=370):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVKPCWRIGAGMERSKINPTKVDGLTWYKDLGLHTFGEFSMAMIQANSVMEDQCQIESGPLTFNNPTVQGTFVGVYDGHG 80  
WD40-rpts                                                                                      

Query       81 GPEASRFIADNIFPKLKKFASEGREISEQVISKAFAETDKDFLKTVTKQWPTNPQMASVGSCCLAGVICNGLVYIANTGD 160 
WD40-rpts                                                                                   (__

Query      161 SRAVLGRSERGGVRAVQLSVEHNANLESARQELWSLHPNDPTILVMKHRLWRVKGVIQVTRSIGDAYLKRAEFNREPLLP 240 
WD40-rpts      ____________________WD 1______________________)                                 

Query      241 KFRLPEHFTKPILSADPSVTITRLSPQDEFIILASDGLWEHLSNQEAVDIVHNSPRQGIARRLLKAALKEAAKKREMRYS 320 
WD40-rpts                                                                                      

Query      321 DLTEIHPGVRRHFHDDITVIVVYLNPHPVKTNSWASPLSIRGGYPMHSTS 370 
WD40-rpts                                                        

1 WD40-repeats found in QUERY=AT5G02760.1 (Len=370):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   158-207      2.82  231.11  0.04678       27.5%     19.81

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  158-207    TGDSRAVLGRSERGGVRAVQLSVEHNANLESARQELWSLHPNDPTILVMK

   WD40 Template    TGECLRTL-SGHTSGVTSVSFSPDGKRLV---------SGSEDGTIKVWD