Input parameters:

  Query = AT5G01770.1 (Len=1336)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G01770.1, Len=1336):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MALGDLMVSRLSQSSVTVVTNHLYDDDDNCASSAHDDSRVSIIASPRVASSSYENLSAATSMAYLPQTLVLCDLRHDDAS 80  
WD40-rpts                                                                                      

Query       81 DIVQPPRWRLKERMKTGCVALVMCLHITVDPPDVIKISPCARLECWIDPFSMFPPRRALEAIGQNLSIQYERWLARARYK 160 
WD40-rpts                                                                                      

Query      161 VELDPTKDDVRKLCLSCRKYAKTERVLFHYNGHGVPKPTPNGEIWVYNKNFTQYIPLPVSELDSWLKTPTIYVFDCSAAR 240 
WD40-rpts                                                                                      

Query      241 VILNAFAEGESSGPPKDCILLAACDVHETLPQSVEFPADVFTSCLTTPINIALKWFCRRSLLKEFIDESLIDRIPGRQND 320 
WD40-rpts                                                                                      

Query      321 RKTLLGELNWIFTAVTDTIAWNVLPRELFQRLFRQDLLVASLFRNFLLAERIMRSGNCTPISHPMLPPTHQHHMWDAWDM 400 
WD40-rpts                                                                                      

Query      401 AAEICLSQLPQFFLDPNTEFQPSSFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRYRALVLLGRFLDMGPWA 480 
WD40-rpts                                                                                      

Query      481 VDLALSVGIYPCVVKLLQTTTIELRQILVFIWTKILALDKSCQVDLVKDRGHIYFIRFLDSSDAFPEQRAMAAFILAVIV 560 
WD40-rpts                                                                                      

Query      561 DGYKRGQESCLEANLIAVCLGHLEATQLCDPPPEPLFLQWLCLCLGKLWEDYLEAQIMGREANASENLIAGHTNLLQVRA 640 
WD40-rpts                                                                                      

Query      641 AAVFALGTLLDVGFDSGKGVCDEEFDDDENIVEDIIIKSLLDVVSDGSPLVRTEVAVALARFAFGHKQHLKSVADSYWKP 720 
WD40-rpts                                                                                      

Query      721 QNSLRTSLPSMAKFHDSGTSIVASSDMGSLTRASPDSQPVAREGRISSSLQEPFSGLMQGSPLADDSSLHSDVGIIHDGV 800 
WD40-rpts                                                                                      

Query      801 SNGVVHQPRPLDNAIYSQSVLAMFTLAKDPSPRIASLGRRVLSVIGIEQIVAKPSKSNGRPGEAASASHTPLAGLVRSSS 880 
WD40-rpts                                                                                      

Query      881 WFDMHTGHLPLTFRTPPVSPPQTSYLTGLRRVCSLELRPHLLGSPDSGLADPILGVSGSERSLLPQSTIYNWSCGHFSKP 960 
WD40-rpts                                                                                      

Query      961 LLGGADANEEIAAQREEKKKFSLEHIAKCQHSSISGLSNIPIANWDTKFETGTKTALLHPFSPIVVAADENERIRVWNYE 1040
WD40-rpts                                          (__________________WD 1__________________)  

Query     1041 EATLLNGFDNNDFPDKGISNLCLVNELDDSLLLVASCNVPTLSRASFAIRIWKDYATKGRQKLVTGFSSIQGQKPGASGL 1120
WD40-rpts       (_______________________WD 2_______________________)           (_______________

Query     1121 NAVVDWQQQSGYLYVSGESLSIMVWDLDKEQLVKSMPFESGCSVTALSASQVHGSQLAAGFADGSVRLYDVRTPDFLVCA 1200
WD40-rpts      ___WD 3__________________)   (__________________WD 4_________________)      (___

Query     1201 TRPHQRVEKVVGLSFQPGLDPAKIVSASQAGDIQFLDLRRPKETYLTIDAHRGSLTALGVHRHAPIIASGSAKQLIKVFS 1280
WD40-rpts      _______________WD 5_________________)    (_________________WD 6________________)

Query     1281 LKGEQLGIIKYHTSFMGQQIGPVSCLAFHPYQMLLAAGAAGSFVSLYTHHNTQLPR 1336
WD40-rpts        (____________________WD 7____________________)        

7 WD40-repeats found in QUERY=AT5G01770.1 (Len=1336):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   997-1038     5.41  338.27  0.00172       17.5%     53.15
  WD 2:  Seg 15  1042-1093     3.21  247.13  0.02872       17.5%     39.92
  WD 3:  Seg 20  1105-1146     5.46  340.12  0.00162       25.0%     40.43
  WD 4:  Seg 23  1150-1190     5.57  344.62  0.00141       25.0%     55.32
  WD 5:  Seg 27  1197-1237     6.15  368.56  0.00067       30.0%     45.49
  WD 6:  Seg 30  1242-1280     6.75  393.41  0.00031       25.0%     53.17
  WD 7:  Seg 34  1283-1328     6.25  372.65  0.00059       27.5%     56.75

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  997-1038   LS--NIPIANWDTKFE-T-------GTKTAL-----LHP--FSPIVVAADEN--------ERIRVWN
   WD 2 1042-1093   -A--TLLNGF--DNND-F-------PDKGISNLCLVNEL--DDSLLLVASCNVPTLSRASFAIRIWK
   WD 3 1105-1146   TGFSSIQGQK--PGAS-G-------LNAVVD-----WQQ--QSGYLYVSGES--------LSIMVWD
   WD 4 1150-1190   -E--QLVKSM--PFESGC-------SVTALS-----ASQ-VHGSQLAAGFAD--------GSVRLYD
   WD 5 1197-1237   -L--VCATRP--HQRV-E-------KVVGLS-----FQPGLDPAKIVSASQA--------GDIQFLD
   WD 6 1242-1280   -K--ETYLTI--DAHR-G-------SLTALG-----VHR--HAPIIASGSAK--------QLIKVFS
   WD 7 1283-1328   -G--EQLGII--KYHT-SFMGQQIGPVSCLA-----FHP--YQMLLAAGAAG--------SFVSLYT

   WD40 Template    TG--ECLRTL--SGHT-S-------GVTSVS-----FSP--DGKRLVSGSED--------GTIKVWD