Input parameters:

  Query = AT4G39330.1 (Len=360)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G39330.1, Len=360):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAKSPETEHPNKVFGWGARDKSGVLSPFHFSRRDNGENDVTVKILFCGVCHTDLHTIKNDWGYSYYPVVPGHEIVGIATK 80  
WD40-rpts                                                                                      

Query       81 VGKNVTKFKEGDRVGVGVISGSCQSCESCDQDLENYCPQMSFTYNAIGSDGTKNYGGYSENIVVDQRFVLRFPENLPSDS 160 
WD40-rpts                                                                                      

Query      161 GAPLLCAGITVYSPMKYYGMTEAGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSTKAEEAINHLGADSFLVTTDPQK 240 
WD40-rpts                                                   (_______________________________WD 

Query      241 MKAAIGTMDYIIDTISAVHALYPLLGLLKVNGKLIALGLPEKPLELPMFPLVLGRKMVGGSDVGGMKETQEMLDFCAKHN 320 
WD40-rpts      1______________________________)                                                

Query      321 ITADIELIKMDEINTAMERLAKSDVRYRFVIDVANSLSPP 360 
WD40-rpts                                              

1 WD40-repeats found in QUERY=AT4G39330.1 (Len=360):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   206-272      2.92  235.45  0.04101       22.5%     12.35

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  206-272    FGLKVTVISSSSTKAEEAINHLGADSFLVTTDPQKMKAAIGTMDYIIDTISAVHALYPLLGLLKVNG

   WD40 Template    TGECLRTLSGHTS---------GVTSVSFSPD-------------GKRLVSGSED-----GTIKVWD