Input parameters:

  Query = AT4G38480.1 (Len=471)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G38480.1, Len=471):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSGRPAKRPRTDHSVVNVWERELGLLPNRSFSNRFSASEDLLRRLGLDKKLDKHKGCVNTVSFNADGDILLSGSDDRQVI 80  
WD40-rpts                                                      (_______________WD 1____________

Query       81 LWDWQTASVKLSFDSGHFNNIFQAKFMPFSDDRTIVTSAADKQVRYSKILESGQVETSLLGKHQGPVHKLAVEPGSPFSF 160 
WD40-rpts      __)    (__________________WD 2_________________)(____________________WD 3_______

Query      161 YTCGEDGAVKHFDLRTRVATNLFTCKEAKFNLVVYLHAIAVDPRNPGLLAVAGMDEYARVYDIRSYRSEGWYNFTQPIDH 240 
WD40-rpts      ____________)   (____________________WD 4____________________)(_________________

Query      241 FCPGHLIGDDHVGITGLAFSDQSELLASYSDEFIYLFTPDMGLGPTPYPSSTKTEERMTPQVYKEHTNRETVKGVNFFGP 320 
WD40-rpts      ________WD 5_________________________)                          (______________W

Query      321 KCEYVVSGSDCGRIFIWRKKDGELLRAMEADRHVVNCIESHPHMPLMCSSGIDTDIKIWTPGGTEKPLSPGNAKQASGFG 400 
WD40-rpts      D 6______________)   (_________________WD 7________________)  (_________________

Query      401 NPRWFDGYYVDDDDDSDDESSEESSDDDDSSEEEENGEVDVEITKDDDNDHGDDDDDDDEDDDGDGDGDEG 471 
WD40-rpts      WD 8________________)                                                  

8 WD40-repeats found in QUERY=AT4G38480.1 (Len=471):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    49-83       9.22  495.42  1.3e-05       37.5%     47.36
  WD 2:  Seg  5    88-128      6.61  387.57  0.00037       22.5%     53.12
  WD 3:  Seg  9   129-173      6.77  394.18  0.00030       25.0%     53.40
  WD 4:  Seg 13   177-222      5.31  334.02  0.00196       12.5%     54.84
  WD 5:  Seg 17   223-278      5.12  326.28  0.00249       22.5%     43.39
  WD 6:  Seg 21   305-338      5.68  349.33  0.00122       22.5%     41.20
  WD 7:  Seg 24   342-380      8.98  485.79  1.8e-05       27.5%     53.74
  WD 8:  Seg 27   383-421      4.21  288.71  0.00798        7.5%     10.08

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   49-83     --------------------------KKLDKHKGC------VNTVSFNA--DGD-ILLSGSDDRQVILWD
   WD 2   88-128    -SVK----L-----------------SFDSGHFNN------IFQAKFMPFSDDR-TIVTSAADKQVRYSK
   WD 3  129-173    ILESGQVET-----------------SLLGKHQGP------VHKLAVEP--GSPFSFYTCGEDGAVKHFD
   WD 4  177-222    -RVA----T-----------------NLFTCKEAKFNLVVYLHAIAVDP-RNPG-LLAVAGMDEYARVYD
   WD 5  223-278    IRSY----RSEGWYNFTQPIDHFCPGHLIGDDHVG------ITGLAFSD--QSE-LLASYS-DEFIYLFT
   WD 6  305-338    ---------------------------EHTNRETV------KGVNFFGP--KCE-YVVSGSDCGRIFIWR
   WD 7  342-380    -GEL----L-----------------RAMEADRHV------VNCIESHP--HMP-LMCSSGIDTDIKIWT
   WD 8  383-421    -GTE----K-----------------PLSPGNAKQ------ASGFGNPR--WFD-GYYVDDDDDSDDESS

   WD40 Template    TGEC----L-----------------RTLSGHTSG------VTSVSFSP--DGK-RLVSGSEDGTIKVWD