Input parameters:

  Query = AT4G37670.2 (Len=613)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G37670.2, Len=613):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MERGALVGSSSTSSYYVPYHFRQSKSNFSSFKPKNKLNPTQFRFNCSWFKPVSSITAAKCNMFDYAVTAAGDVEAEHPVD 80  
WD40-rpts                                                                                      

Query       81 DKQFVRWFREAWPYLWAHRGCTFVVIISGEIIAGSSCDAILKDIAFLHHLGIRFVLVPGTQEQIDQLLAERGREATYVGR 160 
WD40-rpts                                                                                      

Query      161 YRVTDAASLQAAKEAAGAISVMLEAKLSPGPSICNIRRHGDRSRLHDIGVRVDTGNFFAAKRRGVVDGVDFGATGEVKKI 240 
WD40-rpts                                                                    (_________________

Query      241 DVDRICERLDGGSVVLLRNLGHSSSGEVLNCNTYEVATACALAIGADKLICIMDGPILDESGHLIHFLTLQEADMLVRKR 320 
WD40-rpts      ________________WD 1_________________________________)                          

Query      321 AQQSDIAANYVKAVGDGSMAYPEPPNNTNGNITSAQNGRAVSFWGNGNHTPIFQNGVGFDNGNGLWPCEQGFAIGGEERL 400 
WD40-rpts                                                                                      

Query      401 SRLNGYLSELAAAAFVCRGGVKRVHLLDGTISGVLLLELFKRDGMGTMVASDVYEGTRDARVEDLAGIRHIIKPLEESGI 480 
WD40-rpts                                                                                      

Query      481 LVRRTDEELLRALDSFVVVEREGQIIACAALFPFFKDKCGEVAAIAVASDCRGQGQGDKLLDYIEKKASSLGLEKLFLLT 560 
WD40-rpts                                                                                      

Query      561 TRTADWFVRRGFQECSIEIIPESRRQRINLSRNSKYYMKKLIPDRSGISVMRI 613 
WD40-rpts                                                           

1 WD40-repeats found in QUERY=AT4G37670.2 (Len=613):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   223-294      3.03  239.81  0.03591       25.0%     12.53

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  223-294    RGVVDGVDFGATGEVKKIDVDRICERLDGGSVVLLRNLGHSSSGEVLNCNTYEVATACALAIGADKLICIMD

   WD40 Template    TGECLRTLSGHTSGVTSVS--------------------FSPDGKRLVSG------------SEDGTIKVWD