Input parameters:

  Query = AT4G35560.2 (Len=1050)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G35560.2, Len=1050):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFVKKLVEIAAKKPGGSSSEGLRANDVEPRIALHYGIPSGSHLFAYDPFQKILAVSTKDGRIKLFGKDQTQALLVSEETS 80  
WD40-rpts                                        (_____________WD 1_____________)  (___________

Query       81 TSRFLEFVQNQGILLNVNSKNQIEVWDLDKKLLSHVHVFNGEITSFRVMQHTPYFYVGDSSGNVSVFKIEQDSNQVIQLE 160 
WD40-rpts      ______WD 2________________)  (_________________WD 3________________)            

Query      161 YTIPYLASNGSPIEASEDTSVVSILPQLTAESKRILLVFSSGFIALWDIKESKPILKTGVHGMVKQDTKKATCACWVCPS 240 
WD40-rpts               (_________________WD 4________________)               (______________WD

Query      241 GSRVSVGYSNGDILIWSIPSKGECSPESSAMICKLNLGYKSEKIPIASLKWVYAEGKASRVYVIGSSSNSLQVVLLNEQT 320 
WD40-rpts       5______________)                  (_________________WD 6_________________)     

Query      321 ETRMIKLGLHVSEPCADMEMIIADVNEQSKHKQDFLFVLGKSGRVYAYDDYMIEKYLIQSQSKSSPSLPKETVVKLPFSD 400 
WD40-rpts                                                                                      

Query      401 SSSITVGKFLTNPSHLLNLSDEDYAQLAKDAVPFLPFHTVPKESSRSAHFPGFTKVKNVYITGHCDGTISVWDMTCSFPI 480 
WD40-rpts                      (__________________________WD 7_________________________)       

Query      481 LVLFLKEQQIDQDVSSRGNAALTALHYDSNSRLLVSGDHNGMVRLYRFKPEPYLTENSFIPFQGSLKKGNNHIVQSVKYI 560 
WD40-rpts            (__________________WD 8_________________)             (___________________

Query      561 KLTGSITCIQKSQNSKHLAIGSDQGHVSLVDIEEANVLYTKHIASDICPGIISLQFESCIVQGFEKNVLVVAMRDSSVFA 640 
WD40-rpts      ____WD 9______________________)(_______________________WD10_____________________

Query      641 LDSDTGNMIGTNMIKPKKPFKVLYMQILDGKQDTSGNGFDTSRESTVEEISIRQPSVLVCSEKAIYIYSLAHVVQGVKKV 720 
WD40-rpts      _)                                                                              

Query      721 LHKKKFSSSPICSASTFYGTSGVGLTLVFTDGTVEIRSLPELSQLKQTSIRGFTYSSPKPNSLPEITISASWDGDLVMVN 800 
WD40-rpts      (________________WD11________________)                                          

Query      801 GDDELIVSSVLPQKETFRLVESMNRVYKKDNSVCHEGIITSSSPREKKSMFGSVFKTKSKRTTDTEPESSKETIEELSKI 880 
WD40-rpts                                                                                      

Query      881 FSTANFPWNNNVENSREINTITRVEDEEELDIDDIDIDDHHPNQQQQEKPKEQGILSGLSKQKMANRFSNFKGKLKQMAA 960 
WD40-rpts                                                                                      

Query      961 KNEKSVVTNDEKHEEKNGATVDQIKKKYGFTSSDEMGAAKMAQSKLQDNLKKLQGISLRTTEMEDTAKSFSSTAKELLNA 1040
WD40-rpts                                                                                      

Query     1041 VEFNKQSSKS 1050
WD40-rpts                

11 WD40-repeats found in QUERY=AT4G35560.2 (Len=1050):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    35-66       4.81  313.54  0.00370       25.0%     42.36
  WD 2:  Seg  5    69-107      5.85  356.29  0.00098       22.5%     56.31
  WD 3:  Seg  9   110-148      5.17  328.29  0.00234       15.0%     54.66
  WD 4:  Seg 14   170-208      4.38  295.66  0.00644       17.5%     40.52
  WD 5:  Seg 18   224-257      5.26  332.09  0.00208       17.5%     50.11
  WD 6:  Seg 22   276-315      4.39  295.98  0.00637       12.5%     31.86
  WD 7:  Seg 32   417-473      5.04  322.87  0.00277       22.5%     22.49
  WD 8:  Seg 35   487-527      6.36  377.57  0.00051       17.5%     47.68
  WD 9:  Seg 39   541-591      5.72  351.08  0.00115       22.5%     55.25
  WD10:  Seg 43   592-642      4.20  288.06  0.00814       22.5%     47.81
  WD11:  Seg 53   721-758      3.84  273.26  0.01286       17.5%     36.59

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   35-66     ------------------------------------------YGIPSGSHLFAY------DPFQKILAVSTKDGRIKLFG
   WD 2   69-107    -Q-----------------T-----------Q-----AL-LVSEETSTSRFLEF------VQNQGILLNVNSKNQIEVWD
   WD 3  110-148    -K-----------------K-----------L-----LS-HVHVFNGEITSFRV------MQHTPYFYVGDSSGNVSVFK
   WD 4  170-208    -G-----------------S-----------P-----IE-ASEDTSVVSILPQL------TAESKRILLVFSSGFIALWD
   WD 5  224-257    ----------------------------------------VKQDTKKATCACWV------CPSGSRVSVGYSNGDILIWS
   WD 6  276-315    NL-----------------G-----------Y-----KS-EKIPIASLKWVYAE------GKASRVYVIGSSSNSLQVVL
   WD 7  417-473    LNLSDEDYAQLAKDAVPFLP-----------F-----HT-VPKESSRSAHFPGF------TKVKNVYITGHCDGTISVWD
   WD 8  487-527    EQ-----------------Q-----------I-----DQDVSSRGNAALTALHY------DSNSRLLVSGDHNGMVRLYR
   WD 9  541-591    PF-----------------QGSLKKGNNHIVQ-----SV-KYIKLTGSITCIQK------SQNSKHLAIGSDQGHVSLVD
   WD10  592-642    IE-----------------E-----------ANVLYTKH-IASDICPGIISLQFESCIVQGFEKNVLVVAMRDSSVFALD
   WD11  721-758    LH-----------------K------------------K-KFSSSPICSASTFY------GTSGVGLTLVFTDGTVEIRS

   WD40 Template    TG-----------------E-----------C-----LR-TLSGHTSGVTSVSF------SPDGKRLVSGSEDGTIKVWD