Input parameters:

  Query = AT4G35140.1 (Len=496)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G35140.1, Len=496):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSEKARRGRSNFNGLHHPVVDFWRREVGGISSRNFSNRFSASENLVLRLEIYKKLEKHKGCVNTVSFNAEGDVLISGSDD 80  
WD40-rpts                                               (____________________WD 1______________

Query       81 RRVVLWDWQLGNVKLSFHSGHANNVFQAKFMPFSDDRTIVTCAADGMVRRASILEGDKVETSFLGLHQGRAHKLCIEPGN 160 
WD40-rpts      ______)    (__________________WD 2_________________)(____________________WD 3___

Query      161 PHIFYTCGEDGLVQRFDLRTEAPTELFTCRSVDPRRRNMDAIQLNAIAIDPRNSNLFAVGGMEEYARLYDIRRFQGEGLN 240 
WD40-rpts      ________________)              (_________________WD 4________________)          

Query      241 GFTRAADHFCPPHLIGNEDVGITGLAFSEQSELLVSYNDEFIYLFTPGMGLGSNPIPSSPISKSPVSKSESSSSPKDENE 320 
WD40-rpts                  (______________WD 5______________)                                  

Query      321 HSVSLVYKGHKNCETVKGVNFFGPRSEYVVSGSDCGRIFIWRKKGGELIRVMEADRHVVNCIEPHPHIPVLASSGIESDI 400 
WD40-rpts      (__________________WD 6__________________)   (_________________WD 7_____________

Query      401 KVWTSKAAERATLPENIELRKRTPRGWMYRVSSPHELLAQLFSLQNRSSSSPEREGESSSATGRELLDLILTFNDQSDDE 480 
WD40-rpts      ___)               (_______________________________WD 8_________________________

Query      481 NATDDDDGNSHEDFFS 496 
WD40-rpts      _____)          

8 WD40-repeats found in QUERY=AT4G35140.1 (Len=496):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    42-87       9.37  501.60  1.1e-05       37.5%     51.33
  WD 2:  Seg  8    92-132      6.89  399.09  0.00026       27.5%     52.57
  WD 3:  Seg 12   133-177      6.29  374.41  0.00056       20.0%     51.65
  WD 4:  Seg 17   192-230      5.28  332.68  0.00204       10.0%     41.12
  WD 5:  Seg 20   253-286      6.00  362.44  0.00081       22.5%     45.02
  WD 6:  Seg 24   321-362      6.23  371.84  0.00061       30.0%     54.78
  WD 7:  Seg 28   366-404      8.79  477.56  2.3e-05       27.5%     54.48
  WD 8:  Seg 33   420-486      5.26  331.90  0.00209       15.0%     -17.69

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   42-87     SE---------------------NLVLRLE----IYKKLEKHKGCVNTVS---FNA--EG-DV-LISGSDDRRVVLWD
   WD 2   92-132    -N---------------------------V----KLSFHSGHANNVFQAK---FMPFSDD-RT-IVTCAADGMVRRAS
   WD 3  133-177    IL---------------------------EGDKVETSFLGLHQGRAHKLC---IEP--GN-PHIFYTCGEDGLVQRFD
   WD 4  192-230    VD---------------------------------PRRRNMDAIQLNAIA---IDP--RNSNL-FAVGGMEEYARLYD
   WD 5  253-286    ------------------------------------HLIGNEDVGITGLA---FSE--QS-EL-LVSYN-DEFIYLFT
   WD 6  321-362    -H---------------------------S----VSLVYKGHKNCETVKGVNFFGP--RS-EY-VVSGSDCGRIFIWR
   WD 7  366-404    -G---------------------------E----LIRVMEADRHVVNCIE---PHP--HI-PV-LASSGIESDIKVWT
   WD 8  420-486    RKRTPRGWMYRVSSPHELLAQLFSLQNRSS----SSPEREGESSSATGRE---LLD--LI-LT-FNDQSDDENATDDD

   WD40 Template    TG---------------------------E----CLRTLSGHTSGVTSVS---FSP--DG-KR-LVSGSEDGTIKVWD