Input parameters:

  Query = AT4G34460.4 (Len=372)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G34460.4, Len=372):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSVSELKERHAVATETVNNLRDQLRQRRLQLLDTDAAQGRTRVSFGATDLVCCRTLQGHTGKVYSLDWTPERNRIVSASQ 80  
WD40-rpts                                                       (_________________WD 1_________

Query       81 DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPNGQSVACGGLDSVCSIFSLSSTADKDGTVPVSRMLTGHRGYVSCCQYV 160 
WD40-rpts      _______)   (_________________WD 2________________)          (_________________WD

Query      161 PNEDAHLITSSGDQTCILWDVTTGLKTSVFGGEFQSGHTADVLSVSISGSNPNWFISGSCDSTARLWDTRAASRAVRTFH 240 
WD40-rpts       3_________________)         (_________________WD 4________________)    (_______

Query      241 GHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTGHQLQVYQPHGDGENGPVTSIAFSVSGRLLFAGYASNNTCYVWDTL 320 
WD40-rpts      __________WD 5________________)   (___________________WD 6___________________)  

Query      321 LGEVVLDLGLQQDSHRNRISCLGLSADGSALCTGSWDSNLKIWAFGGHRRVI 372 
WD40-rpts       (___________________WD 7__________________)        

7 WD40-repeats found in QUERY=AT4G34460.4 (Len=372):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    50-88      10.34  541.59  3.1e-06       45.0%     56.77
  WD 2:  Seg  7    92-130      8.97  485.13  1.8e-05       17.5%     56.59
  WD 3:  Seg 11   141-180      7.69  432.42  9.2e-05       30.0%     52.98
  WD 4:  Seg 16   190-228      7.94  442.58  6.7e-05       42.5%     43.15
  WD 5:  Seg 19   233-271     10.22  536.99  3.6e-06       42.5%     47.75
  WD 6:  Seg 23   275-318      7.31  416.62  0.00015       40.0%     57.94
  WD 7:  Seg 27   322-364      8.65  471.89  2.7e-05       32.5%     57.70

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   50-88     -LVCCRTL----QGHTGK----VYSLDWTP-ERNRIVSA-SQDGRLIVWN
   WD 2   92-130    -SQKTHAI----KLPCAW----VMTCAFSP-NGQSVACG-GLDSVCSIFS
   WD 3  141-180    -VPVSRML----TGHRGY----VSCCQYVPNEDAHLITS-SGDQTCILWD
   WD 4  190-228    FGG--EFQ----SGHTAD----VLSVSISGSNPNWFISG-SCDSTARLWD
   WD 5  233-271    -SRAVRTF----HGHEGD----VNTVKFFP-DGYRFGTG-SDDGTCRLYD
   WD 6  275-318    -GHQLQVY----QPHGDGENGPVTSIAFSV-SGRLLFAGYASNNTCYVWD
   WD 7  322-364    -GEVVLDLGLQQDSHRNR----ISCLGLSA-DGSALCTG-SWDSNLKIWA

   WD40 Template    TGECLRTL----SGHTSG----VTSVSFSP-DGKRLVSG-SEDGTIKVWD