Input parameters:

  Query = AT4G34460.2 (Len=315)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G34460.2, Len=315):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MWDLQVYSLDWTPERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPNGQSVACGGLDSVCSIFSLSSTADK 80  
WD40-rpts      (_____________WD 1____________)   (_________________WD 2________________)       

Query       81 DGTVPVSRMLTGHRGYVSCCQYVPNEDAHLITSSGDQTCILWDVTTGLKTSVFGGEFQSGHTADVLSVSISGSNPNWFIS 160 
WD40-rpts         (_________________WD 3_________________)         (_________________WD 4______

Query      161 GSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTGHQLQVYQPHGDGENGPVTSIAF 240 
WD40-rpts      __________)    (_________________WD 5________________)   (___________________WD 

Query      241 SVSGRLLFAGYASNNTCYVWDTLLGEVVLDLGLQQDSHRNRISCLGLSADGSALCTGSWDSNLKIWAFGGHRRVI 315 
WD40-rpts      6___________________)   (___________________WD 7__________________)        

7 WD40-repeats found in QUERY=AT4G34460.2 (Len=315):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-31       7.11  408.39  0.00019       27.5%     45.37
  WD 2:  Seg  4    35-73       9.10  490.49  1.5e-05       17.5%     56.56
  WD 3:  Seg  8    84-123      7.85  438.99  7.5e-05       30.0%     51.76
  WD 4:  Seg 13   133-171      8.03  446.29  6.0e-05       42.5%     43.06
  WD 5:  Seg 16   176-214     10.41  544.79  2.8e-06       42.5%     48.67
  WD 6:  Seg 20   218-261      7.39  419.73  0.00014       40.0%     57.52
  WD 7:  Seg 24   265-307      8.79  477.75  2.3e-05       32.5%     57.20

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-31     -------------MWDLQ----VYSLDWTP-ERNRIVSA-SQDGRLIVWN
   WD 2   35-73     -SQKTHAI----KLPCAW----VMTCAFSP-NGQSVACG-GLDSVCSIFS
   WD 3   84-123    -VPVSRML----TGHRGY----VSCCQYVPNEDAHLITS-SGDQTCILWD
   WD 4  133-171    FGG--EFQ----SGHTAD----VLSVSISGSNPNWFISG-SCDSTARLWD
   WD 5  176-214    -SRAVRTF----HGHEGD----VNTVKFFP-DGYRFGTG-SDDGTCRLYD
   WD 6  218-261    -GHQLQVY----QPHGDGENGPVTSIAFSV-SGRLLFAGYASNNTCYVWD
   WD 7  265-307    -GEVVLDLGLQQDSHRNR----ISCLGLSA-DGSALCTG-SWDSNLKIWA

   WD40 Template    TGECLRTL----SGHTSG----VTSVSFSP-DGKRLVSG-SEDGTIKVWD