Input parameters:

  Query = AT4G34460.1 (Len=377)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G34460.1, Len=377):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSVSELKERHAVATETVNNLRDQLRQRRLQLLDTDVARYSAAQGRTRVSFGATDLVCCRTLQGHTGKVYSLDWTPERNRI 80  
WD40-rpts                                                            (_________________WD 1____

Query       81 VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPNGQSVACGGLDSVCSIFSLSSTADKDGTVPVSRMLTGHRGYVS 160 
WD40-rpts      ____________)   (_________________WD 2________________)          (______________

Query      161 CCQYVPNEDAHLITSSGDQTCILWDVTTGLKTSVFGGEFQSGHTADVLSVSISGSNPNWFISGSCDSTARLWDTRAASRA 240 
WD40-rpts      ___WD 3_________________)          (________________WD 4________________)    (__

Query      241 VRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTGHQLQVYQPHGDGENGPVTSIAFSVSGRLLFAGYASNNTCY 320 
WD40-rpts      _______________WD 5________________)   (___________________WD 6_________________

Query      321 VWDTLLGEVVLDLGLQQDSHRNRISCLGLSADGSALCTGSWDSNLKIWAFGGHRRVI 377 
WD40-rpts      __)   (___________________WD 7__________________)        

7 WD40-repeats found in QUERY=AT4G34460.1 (Len=377):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    55-93      10.50  548.28  2.5e-06       45.0%     55.45
  WD 2:  Seg  7    97-135      8.96  484.64  1.8e-05       17.5%     54.68
  WD 3:  Seg 11   146-185      7.71  432.98  9.1e-05       30.0%     51.65
  WD 4:  Seg 16   196-233      8.14  451.01  5.2e-05       45.0%     43.64
  WD 5:  Seg 19   238-276     10.32  540.87  3.2e-06       42.5%     44.66
  WD 6:  Seg 22   280-323      7.31  416.50  0.00015       40.0%     55.39
  WD 7:  Seg 26   327-369      8.70  473.98  2.5e-05       32.5%     52.25

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   55-93     -LVCCRTL----QGHTGK----VYSLDWTP-ERNRIVSA-SQDGRLIVWN
   WD 2   97-135    -SQKTHAI----KLPCAW----VMTCAFSP-NGQSVACG-GLDSVCSIFS
   WD 3  146-185    -VPVSRML----TGHRGY----VSCCQYVPNEDAHLITS-SGDQTCILWD
   WD 4  196-233    GGE---FQ----SGHTAD----VLSVSISGSNPNWFISG-SCDSTARLWD
   WD 5  238-276    -SRAVRTF----HGHEGD----VNTVKFFP-DGYRFGTG-SDDGTCRLYD
   WD 6  280-323    -GHQLQVY----QPHGDGENGPVTSIAFSV-SGRLLFAGYASNNTCYVWD
   WD 7  327-369    -GEVVLDLGLQQDSHRNR----ISCLGLSA-DGSALCTG-SWDSNLKIWA

   WD40 Template    TGECLRTL----SGHTSG----VTSVSFSP-DGKRLVSG-SEDGTIKVWD