Input parameters:

  Query = AT4G34380.1 (Len=495)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G34380.1, Len=495):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRNETGGTMVVDLQTDPYNNIHSRHNLSYDLSEGPKPRPKFGNISKTDHDEIFPPDDPIIINSNVTHQRFSSVSASTMSS 80  
WD40-rpts                                                                             (________

Query       81 GPASGEGSPCVMSPWARVSPPWGADFNEDNVLETNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEHAGFK 160 
WD40-rpts      _____WD 1_____________)           (________________WD 2_______________)(________

Query      161 SSSGLIKAIVIFGDRIFTGHQDGKIRIWKVSKRKPGKHKRVGTLPTFKSMVKSSVNPKHFMEVRRNRNSVKTKHNDAVSS 240 
WD40-rpts      ________WD 3________________)(______________WD 4______________)(________________

Query      241 LSLDVELGLLYSSSWDTTIKVWRIADSKCLESIHAHDDAINSVMSGFDDLVFTGSADGTVKVWKRELQGKGTKHTLAQVL 320 
WD40-rpts      _WD 5_________________)   (________________WD 6________________)         (______

Query      321 LKQENAVTALAVKSQSSIVYCGSSDGLVNYWERSKRSFTGGILKGHKSAVLCLGIAGNLLLSGSADKNICVWRRDPSDKS 400 
WD40-rpts      ___________WD 7________________)(__________________WD 8_________________)       

Query      401 HQCLSVLTGHMGPVKCLAVEEERACHQGAKASVAEGDRKWIIYSGSLDKSVKVWRVSERMATWKEMDEPAASSERKSSSS 480 
WD40-rpts                         (_______________WD 9_______________)                         

Query      481 PHEGSGAWSSRNVEK 495 
WD40-rpts                     

9 WD40-repeats found in QUERY=AT4G34380.1 (Len=495):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    72-103      6.14  368.16  0.00068       17.5%     21.45
  WD 2:  Seg  6   115-151      6.18  369.94  0.00064       20.0%     47.50
  WD 3:  Seg 10   152-189      8.11  449.57  5.4e-05       17.5%     52.93
  WD 4:  Seg 14   190-223      5.26  332.03  0.00209       12.5%     40.56
  WD 5:  Seg 17   224-263      9.88  522.97  5.6e-06       32.5%     55.14
  WD 6:  Seg 21   267-304      8.55  467.67  3.1e-05       35.0%     53.65
  WD 7:  Seg 25   314-352      8.50  465.64  3.3e-05       20.0%     52.03
  WD 8:  Seg 29   353-393      6.84  397.40  0.00027       35.0%     44.55
  WD 9:  Seg 35   420-455      7.14  409.54  0.00019       27.5%     39.18

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   72-103    -----------SVSASTMSSGPASGEGSPCVMSPWARVSPPWG
   WD 2  115-151    -NG---LIGSIVRKEGHIYSL--AASGDLLYTGSDSKNIRVWK
   WD 3  152-189    NLK---EHAGFKSSSGLIKAIVIFGD--RIFTGHQDGKIRIWK
   WD 4  190-223    ---------VSKRKPGKHKRVGTLPTFKSMVKSSVNPKHFMEV
   WD 5  224-263    RRN---RNSVKTKHNDAVSSLSLDVELGLLYSSSWDTTIKVWR
   WD 6  267-304    -SK---CLESIHAHDDAINSVMSGFDD-LVFTGSADGTVKVWK
   WD 7  314-352    -HT---LAQVLLKQENAVTALAVKSQSSIVYCGSSDGLVNYWE
   WD 8  353-393    RSKRSFTGGILKGHKSAVLCLGIA--GNLLLSGSADKNICVWR
   WD 9  420-455    EEE-------RACHQGAKASVAEGDRKWIIYSGSLDKSVKVWR

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD